Browse Element(s) Details


OsAffx.19674.1.S1_at

Description tigr:9640.m01440
TID=OsAffx.19674.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g148309/11hypothetical protein
LOC_Os03g179001/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14800NANA12+8461001..8467677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14820Os.47463.1.S1_x_at4/1112+8474441..8477468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14820Os.14491.2.S1_x_at4/1112+8474441..8477468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14830Os.39997.2.S1_a_at11/1112+8484033..8488283hypothetical protein
LOC_Os12g14830OsAffx.19674.1.S1_at9/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.2.S1_x_at7/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.1.S1_x_at2/1112+8484033..8488283hypothetical protein
LOC_Os12g14840Os.32811.1.S1_at11/1112+8492235..8495385expressed protein
LOC_Os12g14850OsAffx.19675.1.S1_x_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.19675.1.S1_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.13714.1.S1_x_at1/1112+8504109..8504357hypothetical protein
LOC_Os12g14860OsAffx.31743.1.S1_at11/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.20705.2.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.29146.1.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19674.1.S1_at--67--2311Chr12:8484078..8484102 (25 bp)
AAAGGCCCTCTATCGCCATGGGAGC
LOC_Os12g14830
OsAffx.19674.1.S1_at--584--6391NONE
GATCGAGCCGCTGTGGATGTGTAAA
NONE
OsAffx.19674.1.S1_at--208--2311Chr12:8484791..8484815 (25 bp)
AAAGTTTGACTACCGGAATCATTGG
LOC_Os12g14830
OsAffx.19674.1.S1_at--453--1912Chr12:8485482..8485501 (20 bp)
ACGTGAGGCTATTGAGGTCCGTTCA
LOC_Os12g14830
OsAffx.19674.1.S1_at--506--7251Chr12:8485493..8485517 (25 bp)
GTCCGTTCAATCACGCGCGAAGGAA
LOC_Os12g14830
OsAffx.19674.1.S1_at--750--8191Chr12:8485514..8485538 (25 bp)
GGAAGATCTAGCCATCCATGTGTCC
LOC_Os12g14830
OsAffx.19674.1.S1_at--1127--8491Chr12:8485923..8485947 (25 bp)
TGGCAGGCCATCGATCTGGCGCTTC
LOC_Os12g14830
OsAffx.19674.1.S1_at--161--8091Chr12:8486078..8486369 (25 bp)
GGACCGTGACCCTTTCAGAATCAAT
LOC_Os12g14830
OsAffx.19674.1.S1_at--849--3052Chr12:8486367..8486391 (25 bp)
AATCTGTCTCTTTATGCGGCATTTC
LOC_Os12g14830
OsAffx.19674.1.S1_at--753--4951Chr12:8486385..8486409 (25 bp)
GCATTTCTTGTAACAGCCCTAGCAC
LOC_Os12g14830
OsAffx.19674.1.S1_at--186--4551NONE
GCCCTAGCACAATTACCAGATTCGG
NONE
Target Sequence 
AAAGGCCCTCTATCGCCATGGGAGCCCCGCAGATCGAGCCGCTGTGGATGTGTAAATAGTAAAAGTTTGACTACCGGAAT
CATTGGTGGTGCGGGGTTACGCTGTGGGTGGGACGTGAGGCTATTGAGGTCCGTTCAATCACGCGCGAAGGAAGATCTAG
CCATCCATGTGTCCCAGCGTGGCTGCTCTTCCACCATCTGCCAGATCCGCTGGCAGGCCATCGATCTGGCGCTTCGTCTC
TCCCCGGTGGATCTGGCCGCTCAGAGCCTCGCCAGCACCGAGGACAGCGAGCTCGCGCGGCGGCTCAGGGGCCCCGCCGT
GGCCGTGGGGAAGCGCCTCAGTTTCATGAATGAGTACCTCGCCGAGGACCGTGACCCTTTCAGAATCAATCTGTCTCTTT
ATGCGGCATTTCTTGTAACAGCCCTAGCACAATTACCAGATTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis