Browse Element(s) Details


OsAffx.19681.1.S1_at

Description tigr:9640.m01481
TID=OsAffx.19681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1524010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15190NANA12+8659415..8660190Ca-dependent nuclease, putative
LOC_Os12g15206NANA12+8663271..8663721NA
LOC_Os12g15222OsAffx.29272.4.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.11414.1.S1_at11/1112+8667462..8676878expressed protein
LOC_Os12g15222Os.14164.1.S1_at10/1112+8667462..8676878expressed protein
LOC_Os12g15240OsAffx.19681.1.S1_at10/1112+8685102..8686661expressed protein
LOC_Os12g15240OsAffx.15615.1.S1_at9/1112+8685102..8686661expressed protein
LOC_Os12g15250OsAffx.19682.1.S1_at11/1112+8687515..8688216hypothetical protein
LOC_Os12g15260OsAffx.19683.1.S1_at11/1112+8698533..8699944hypothetical protein
LOC_Os12g15270OsAffx.19684.1.S1_at11/1112+8708198..8708857hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19681.1.S1_at--560--2271Chr12:8686596..8686620 (25 bp)
AAATCCAGCTCCTGGCGGCAAATTA
LOC_Os12g15240
OsAffx.19681.1.S1_at--469--8231Chr12:8686580..8686604 (25 bp)
GGCAAATTACCTCTGCGCCAAATTT
LOC_Os12g15240
OsAffx.19681.1.S1_at--345--10471Chr12:8686574..8686598 (25 bp)
TTACCTCTGCGCCAAATTTTCATTG
LOC_Os12g15240
OsAffx.19681.1.S1_at--640--2251Chr12:8686561..8686585 (25 bp)
AAATTTTCATTGTTTGGCGCGCGAA
LOC_Os12g15240
OsAffx.19681.1.S1_at--767--10871Chr12:8686548..8686572 (25 bp)
TTGGCGCGCGAAATCTCTCTCATGG
LOC_Os12g15240
OsAffx.19681.1.S1_at--561--2271Chr12:8686538..8686562 (25 bp)
AAATCTCTCTCATGGCGCGCCTAAT
LOC_Os12g15240
OsAffx.19681.1.S1_at--304--4571Chr12:8686524..8686548 (25 bp)
GCGCGCCTAATCTCTCCTCAATGTG
LOC_Os12g15240
OsAffx.19681.1.S1_at--157--1551Chr12:8686323..8686347 (25 bp)
AGCTTGGAGGAGCTCGATGTCCCCT
LOC_Os12g15240
OsAffx.19681.1.S1_at--605--1511Chr12:8686121..8686145 (25 bp)
AGCAGCGCTAGCAACATCCGCCATG
LOC_Os12g15240
OsAffx.19681.1.S1_at--737--5051Chr12:8686093..8686117 (25 bp)
GCAGCAGTGGACACATCGCCAAGAT
LOC_Os12g15240
OsAffx.19681.1.S1_at--399--3651NONE
CTTCAAGTCCAAGCCAGGAACTAGG
NONE
Target Sequence 
AAATCCAGCTCCTGGCGGCAAATTACCTCTGCGCCAAATTTTCATTGTTTGGCGCGCGAAATCTCTCTCATGGCGCGCCT
AATCTCTCCTCAATGTGAACTCGCCACCCTCCCGCCTCGCGCAGATCGGGGGGAGTGGGGCAGCATGGAGGAGCTCGCGG
AGCTCGACAGCGGCGACCACGGCGGGTAGCTTGGTGGCGGCGCCAGATCCATCCTCGAGTTCGCCGCTCCTCCCCACCTC
GCGCAGATCGGCAGGCATGGAGCTCGGCGGCGCAGCTTGGAGGAGCTCGATGTCCCCTGCGCAGACGCAGCCCCTCATCT
CCCTCCTGACTTCCCCACCATCGGCCTCAACTGCCCCGGGCTCCGGCAATCTCCGGGGTTGCAGCAGCGCTAGCAACATC
CGCCATGCTAGCAGCAGTGGACACATCGCCAAGATGAAGGCCCTCTTCAAGTCCAAGCCAGGAACTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis