Browse Element(s) Details


OsAffx.19824.1.S1_at

Description tigr:9640.m02451
TID=OsAffx.19824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2565010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25610NANA12+14819296..14820579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25630Os.8762.1.S1_at11/1112+14824690..14827948Sulfite oxidase, putative, expressed
LOC_Os12g25630Os.7414.1.S1_at1/1112+14824690..14827948Sulfite oxidase, putative, expressed
LOC_Os12g25640OsAffx.19823.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.9939.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.50043.1.A1_at1/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25650OsAffx.19824.1.S1_at10/1112+14844949..14846006hypothetical protein
LOC_Os12g25660OsAffx.19825.1.S1_x_at11/1112+14863480..14865154Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19824.1.S1_at--76--6371Chr12:14845943..14845967 (25 bp)
GATCCAAACACCAAAGCTGTTGCCA
LOC_Os12g25650
OsAffx.19824.1.S1_at--1041--2351Chr12:14845931..14845955 (25 bp)
AAAGCTGTTGCCACTGACCGGACAA
LOC_Os12g25650
OsAffx.19824.1.S1_at--16--8911Chr12:14845917..14845941 (25 bp)
TGACCGGACAATCCGCAACCTGGTA
LOC_Os12g25650
OsAffx.19824.1.S1_at--4--3051NONE
AATCCGCAACCTGGTATGTCATGAG
NONE
OsAffx.19824.1.S1_at--23--6932Chr12:14845104..14845128 (25 bp)
GTATGTCATGAGGACCTTCGACTAA
LOC_Os12g25650
OsAffx.19824.1.S1_at--836--6171Chr12:14845095..14845119 (25 bp)
GAGGACCTTCGACTAACCTGCCGAA
LOC_Os12g25650
OsAffx.19824.1.S1_at--294--9172Chr12:14845077..14845101 (25 bp)
TGCCGAAACCACCTAAGCCATCAAA
LOC_Os12g25650
OsAffx.19824.1.S1_at--656--3711Chr12:14845065..14845089 (25 bp)
CTAAGCCATCAAAAATATCGGTCAA
LOC_Os12g25650
OsAffx.19824.1.S1_at--490--10051Chr12:14845050..14845074 (25 bp)
TATCGGTCAAGTCTTTTGGGCGAAA
LOC_Os12g25650
OsAffx.19824.1.S1_at--507--7671Chr12:14844993..14845017 (25 bp)
GGGTTCGTCACTAAGAATCGGGCAA
LOC_Os12g25650
OsAffx.19824.1.S1_at--893--5231Chr12:14844979..14845003 (25 bp)
GAATCGGGCAAAGCCTGGCGATGAA
LOC_Os12g25650
Target Sequence 
GATCCAAACACCAAAGCTGTTGCCACTGACCGGACAATCCGCAACCTGGTATGTCATGAGGACCTTCGACTAACCTGCCG
AAACCACCTAAGCCATCAAAAATATCGGTCAAGTCTTTTGGGCGAAACCCCCGGGCGAAGCCGTAGGGCGAAGACCAAGG
GGTTCGTCACTAAGAATCGGGCAAAGCCTGGCGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis