Browse Element(s) Details


OsAffx.19886.1.S1_at

Description tigr:9640.m02861
TID=OsAffx.19886.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2968010/11hypothetical protein
LOC_Os07g467401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29640Os.46314.3.S1_at2/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640OsAffx.7362.1.S1_x_at1/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29650OsAffx.31931.1.S1_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31931.1.S1_x_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31930.1.S1_x_at1/1112+17674737..17676629hypothetical protein
LOC_Os12g29660Os.27674.1.S1_at11/1112+17678736..17688870DEAD/DEAH box helicase family protein, expressed
LOC_Os12g29670Os.9359.1.S1_at11/1112+17689036..17692280expressed protein
LOC_Os12g29680OsAffx.19886.1.S1_at10/1112+17695399..17700073hypothetical protein
LOC_Os12g29690OsAffx.31932.1.S1_at11/1112+17701955..17706469NB-ARC domain containing protein
LOC_Os12g29700OsAffx.24866.1.S1_at9/1112+17711461..17716647retrotransposon protein, putative, unclassified
LOC_Os12g29720OsAffx.19888.1.S1_at11/1112+17716855..17718664hypothetical protein
LOC_Os12g29714OsAffx.30032.4.S1_at11/1112+17720777..17721313hypothetical protein
LOC_Os12g29714OsAffx.28563.1.S1_x_at1/1112+17720777..17721313hypothetical protein
LOC_Os12g29714OsAffx.16416.1.S1_x_at1/1112+17720777..17721313hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19886.1.S1_at--282--5452Chr12:17698757..17698781 (25 bp)
GAACCCGACGAAGGCAGAGCAGCTT
LOC_Os12g29680
OsAffx.19886.1.S1_at--730--451Chr12:17698718..17698742 (25 bp)
ATCTGAAAGTTGTCTACCACCTCTG
LOC_Os12g29680
OsAffx.19886.1.S1_at--1009--3811Chr12:17698696..17698720 (25 bp)
CTGCCAATCTCGCTGGAACCAAAAA
LOC_Os12g29680
OsAffx.19886.1.S1_at--701--1491NONE
AGCAACAGAACCTTACATCCAGAAT
NONE
OsAffx.19886.1.S1_at--776--3151Chr12:17697669..17697693 (25 bp)
AATTCGATTCCCTCAGTTGGCTGTA
LOC_Os12g29680
OsAffx.19886.1.S1_at--1126--5952Chr12:17697130..17697607 (25 bp)
GAGAAGTCTGGTTTCATGGTTCCAT
LOC_Os12g29680
OsAffx.19886.1.S1_at--640--9631Chr12:17697117..17697137 (21 bp)
TCATGGTTCCATTGGCTGTGGCATA
LOC_Os12g29680
OsAffx.19886.1.S1_at--838--271Chr12:17697095..17697119 (25 bp)
ATAGAAATCCTATTGGCCCCAAACT
LOC_Os12g29680
OsAffx.19886.1.S1_at--1034--5051Chr12:17695662..17695686 (25 bp)
GCAGCATTCGAGGTGTTTCATTCAA
LOC_Os12g29680
OsAffx.19886.1.S1_at--362--7773Chr07:27935281..27935413 (25 bp)
GGTGACACCGTTGATGGAGCCATAC
LOC_Os07g46740
OsAffx.19886.1.S1_at--606--8091Chr12:17695605..17695629 (25 bp)
GGAGCCATACATGCTGCTATTGTCA
LOC_Os12g29680
Target Sequence 
GAACCCGACGAAGGCAGAGCAGCTTGGCATGGAGCAAGCATCTGAAAGTTGTCTACCACCTCTGCCAATCTCGCTGGAAC
CAAAAACCTCCACTGCTTCGAAAGCAACAGAACCTTACATCCAGAATTCGATTCCCTCAGTTGGCTGTACTATCTGTAAA
TCAAATTTGAAGATAACAAAAGCAACAGCTTGTTTATCAATTCAGGAACTGAGAAGTCTGGTTTCATGGTTCCATTGGCT
GTGGCATAGAAATCCTATTGGCCCCAAACTACCATCGGCGCCCAAGTTCCCCTCGACTTCCCGTCCACAGCGTGGGGGCA
GGAGTGCTTATGTTAAAAATAGGAACAAAATGCAAGAGCAGCATTCGAGGTGTTTCATTCAAGGAACAGAAGCAGCAGAG
GTGACACCGTTGATGGAGCCATACATGCTGCTATTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis