Browse Element(s) Details


OsAffx.19888.1.S1_at

Description tigr:9640.m02867
TID=OsAffx.19888.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2972011/11hypothetical protein
LOC_Os12g2971911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29670Os.9359.1.S1_at11/1112+17689036..17692280expressed protein
LOC_Os12g29680OsAffx.19886.1.S1_at10/1112+17695399..17700073hypothetical protein
LOC_Os12g29690OsAffx.31932.1.S1_at11/1112+17701955..17706469NB-ARC domain containing protein
LOC_Os12g29700OsAffx.24866.1.S1_at9/1112+17711461..17716647retrotransposon protein, putative, unclassified
LOC_Os12g29720OsAffx.19888.1.S1_at11/1112+17716855..17718664hypothetical protein
LOC_Os12g29714OsAffx.30032.4.S1_at11/1112+17720777..17721313hypothetical protein
LOC_Os12g29714OsAffx.28563.1.S1_x_at1/1112+17720777..17721313hypothetical protein
LOC_Os12g29714OsAffx.16416.1.S1_x_at1/1112+17720777..17721313hypothetical protein
LOC_Os12g29710OsAffx.31932.2.S1_at11/1112+17729944..17734518NB-ARC domain containing protein
LOC_Os12g29719OsAffx.19888.1.S1_at11/1112+17739371..17741180hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19888.1.S1_at--469--5772Chr12:17739547..17739571 (25 bp)
GACGATGCGGTTTACCCAAGAGCAG
LOC_Os12g29719
OsAffx.19888.1.S1_at--1007--7512Chr12:17739599..17739623 (25 bp)
GTGGAGATACCATTCAACGACAACA
LOC_Os12g29719
OsAffx.19888.1.S1_at--449--3132Chr12:17739665..17739689 (25 bp)
AATTTTCCCCAGGACCTCATCGATA
LOC_Os12g29719
OsAffx.19888.1.S1_at--767--3752Chr12:17739680..17739704 (25 bp)
CTCATCGATAAGCTCAAGGCGTATG
LOC_Os12g29719
OsAffx.19888.1.S1_at--90--8192Chr12:17739715..17739739 (25 bp)
GGAAGCGGAGAAGGCCAGCTTCATC
LOC_Os12g29719
OsAffx.19888.1.S1_at--608--4032Chr12:17739739..17739763 (25 bp)
CGAGATTCAGAACCATATCCGCGGG
LOC_Os12g29719
OsAffx.19888.1.S1_at--1023--8012Chr12:17740470..17740489 (20 bp)
GGAGGAGATTCTCCAAATGCCAATG
LOC_Os12g29719
OsAffx.19888.1.S1_at--1127--572Chr12:17740481..17740505 (25 bp)
ATGCCAATGCAAGTAGGATCAACAC
LOC_Os12g29719
OsAffx.19888.1.S1_at--565--2472Chr12:17740501..17740525 (25 bp)
AACACCTCAAACGAGGCAGTACGCT
LOC_Os12g29719
OsAffx.19888.1.S1_at--260--8272Chr12:17740515..17740539 (25 bp)
GGCAGTACGCTGGAGACAATTTTCT
LOC_Os12g29719
OsAffx.19888.1.S1_at--1020--3172Chr12:17740531..17740555 (25 bp)
CAATTTTCTCAGTTTAGCTTGCAAA
LOC_Os12g29719
Target Sequence 
GACGATGCGGTTTACCCAAGAGCAGATCAACAACTGCATCGCGTACAAGGACGTGGAGATACCATTCAACGACAACATGC
CCAGCCTCTTGGAGGCCCTGGGCGAGGAAACCCTCGCCAATTTTCCCCAGGACCTCATCGATAAGCTCAAGGCGTATGAG
GATGAGAGGGAAGCGGAGAAGGCCAGCTTCATCGAGATTCAGAACCATATCCGCGGGGAACGGGATGGGATCCTCAACCA
GTACTACACCAAAGGCTACGCCGAGTACGAGGTCGTTGTCGACGACGATGGAGAAGAAGACAGTAAAGTTCCTCCTCGAN
TTGTTGCTCCCCCTGGCCGGAGAAGGTTCCGGAACGGGGTTACCGTGAAGAAGAACCAGTCGGGAGGAGGAGATTCTCCA
AATGCCAATGCAAGTAGGATCAACACCTCAAACGAGGCAGTACGCTGGAGACAATTTTCTCAGTTTAGCTTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis