Browse Element(s) Details


OsAffx.19938.1.S1_x_at

Description tigr:9640.m03181
TID=OsAffx.19938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3270010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein
LOC_Os12g32690OsAffx.16381.3.S1_x_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.3.S1_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.1.S1_x_at8/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.2.S1_x_at4/1112+19706168..19714591hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_x_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32710OsAffx.7771.1.S1_x_at11/1112+19725616..19729383NB-ARC domain containing protein, expressed
LOC_Os12g32720Os.47463.1.S1_x_at6/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32720Os.14491.2.S1_x_at4/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32730Os.46053.2.S1_x_at9/1112+19741136..19744310transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32740NANA12+19745551..19748883transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19938.1.S1_x_at--313--3811NONE
CTCCGCCAGGGAGTAGCATATGTTC
NONE
OsAffx.19938.1.S1_x_at--245--4171Chr12:19719490..19719510 (21 bp)
CGCCAGGGAGTAGCATATGTTCCTC
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--582--7651Chr12:19719485..19719509 (25 bp)
GGGAGTAGCATATGTTCCTCCTACA
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--204--6091Chr12:19719483..19719507 (25 bp)
GAGTAGCATATGTTCCTCCTACAAT
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--1040--6951Chr12:19719481..19719505 (25 bp)
GTAGCATATGTTCCTCCTACAATTG
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--432--9831Chr12:19719464..19719488 (25 bp)
TACAATTGGATCTTCCGAAAGAATT
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--1139--6391Chr12:19719456..19719480 (25 bp)
GATCTTCCGAAAGAATTGTTATGAG
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--689--8771Chr12:19719440..19719464 (25 bp)
TGTTATGAGAGGAAATACCCAGACC
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--475--10111Chr12:19719437..19719461 (25 bp)
TATGAGAGGAAATACCCAGACCTTT
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--348--1751Chr12:19719421..19719442 (22 bp)
ACCTTTCTCAGCTTTCTAATGGCTA
LOC_Os12g32700
OsAffx.19938.1.S1_x_at--159--2971Chr12:19719350..19719371 (22 bp)
AATGGCTATTTCATTGCGGCAGCCC
LOC_Os12g32700
Target Sequence 
CTCCGCCAGGGAGTAGCATATGTTCCTCCTACAATTGGATCTTCCGAAAGAATTGTTATGAGAGGAAATACCCAGACCTT
TCTCAGCTTTCTAATGGCTATTTCATTGCGGCAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19938.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis