Browse Element(s) Details


OsAffx.19950.1.S1_at

Description tigr:9640.m03259
TID=OsAffx.19950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3374011/11Athila ORF 1, putative
LOC_Os08g229101/11Transposable element protein, putative, Retrotrans_gag
LOC_Os01g320441/11hypothetical protein
LOC_Os04g075501/11Zinc knuckle family protein
LOC_Os07g158401/11hypothetical protein
LOC_Os10g149301/11Zinc knuckle family protein
LOC_Os02g253401/11hypothetical protein
LOC_Os01g407701/11Transposable element protein, putative, Retrotrans_gag
LOC_Os08g213901/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33690OsAffx.447.1.S1_at2/1112+20307905..20312450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33690OsAffx.22947.2.S1_x_at1/1112+20307905..20312450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33690Os.52609.1.S1_at1/1112+20307905..20312450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33700NANA12+20314838..20317749retrotransposon protein, putative, unclassified
LOC_Os12g33710OsAffx.32004.1.S1_at11/1112+20319356..20320162hypothetical protein
LOC_Os12g33720OsAffx.32005.1.S1_at11/1112+20320532..20321130hypothetical protein
LOC_Os12g33730OsAffx.30486.1.S1_at1/1112+20327049..20328454hypothetical protein
LOC_Os12g33740OsAffx.19950.1.S1_at11/1112+20329800..20330480Athila ORF 1, putative
LOC_Os12g33750Os.32823.1.S1_x_at2/1112+20336407..20336790hypothetical protein
LOC_Os12g33760OsAffx.7780.1.S1_x_at11/1112+20341321..20341560hypothetical protein
LOC_Os12g33770OsAffx.7781.1.S1_at10/1112+20342443..20343518hypothetical protein
LOC_Os12g33780OsAffx.32007.1.S1_at11/1112+20346345..20348699hypothetical protein
LOC_Os12g33790NANA12+20354629..20355279hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19950.1.S1_at--631--1571Chr12:20329867..20329891 (25 bp)
AGCTCTCAGAAAAGAAGGATCCGGT
LOC_Os12g33740
OsAffx.19950.1.S1_at--38--1011Chr12:20329882..20329906 (25 bp)
AGGATCCGGTGTGTCCAACGATCAG
LOC_Os12g33740
OsAffx.19950.1.S1_at--1083--4751Chr12:20329906..20329930 (25 bp)
GCTGCTCAATCAGGGCACAGCAGTT
LOC_Os12g33740
OsAffx.19950.1.S1_at--358--5031Chr12:20329925..20329949 (25 bp)
GCAGTTCGACCAAGCTTTGTATGAC
LOC_Os12g33740
OsAffx.19950.1.S1_at--1013--5851Chr12:20329932..20329956 (25 bp)
GACCAAGCTTTGTATGACCTTGGAG
LOC_Os12g33740
OsAffx.19950.1.S1_at--465--1111Chr12:20329965..20329989 (25 bp)
AGTGTCATGCCCAACGACGTTTTTG
LOC_Os12g33740
OsAffx.19950.1.S1_at--955--3511Chr12:20329970..20329994 (25 bp)
CATGCCCAACGACGTTTTTGACAAG
LOC_Os12g33740
OsAffx.19950.1.S1_at--666--97110Chr12:20329996..20330050 (25 bp)
TCAACTTCACGCTGGCTGATTCGTC
LOC_Os12g33740
OsAffx.19950.1.S1_at--1038--1831Chr12:20330036..20330058 (23 bp)
ACGCTGGCTGATTCGTCGGTCCGTT
LOC_Os12g33740
OsAffx.19950.1.S1_at--627--5591Chr12:20330397..20330421 (25 bp)
GAAATAGTGATTCCCATAAACCGTT
LOC_Os12g33740
OsAffx.19950.1.S1_at--926--7371Chr12:20330403..20330427 (25 bp)
GTGATTCCCATAAACCGTTATTGGA
LOC_Os12g33740
Target Sequence 
AGCTCTCAGAAAAGAAGGATCCGGTGTGTCCAACGATCAGCTGCTCAATCAGGGCACAGCAGTTCGACCAAGCTTTGTAT
GACCTTGGAGCAAGTGTCAGTGTCATGCCCAACGACGTTTTTGACAAGCTCAACTTCACGCTGGCTGATTCGTCGGTCCG
TTACCCGGCAGGGATAGCGGAGGATGTGCCGGTCAAGATACGGGATTTCTTCATCCCGTTTGATTTCGTGGTGCTGGATA
TGGACACGGGAAAGGAAACGCCGCTGATCTTGGGGCGTCCGTTCCTTAGCACTGTGGGAGCCAACATTGATGTGGGAACG
GGAAGTATCTGGTTCCATATTAACAGGAAGGAAGAGAAGTTTGAGTTTCAGCCAAGGACTGAACACTTATCCATGGTCAG
AATCAAGTACAGGCCAAACCCGCAAAACATCCAAGTGGTCGAGGTGGAGCCACCCAAGACGGACAGCCTGGTGAAATTCA
TGCAGAATTTTTTGGAGAAGGAAATAGTGATTCCCATAAACCGTTATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis