Browse Element(s) Details


OsAffx.32005.1.S1_at

Description tigr:9640.m03256
TID=OsAffx.32005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3372011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33670Os.40855.5.S1_x_at11/1112+20298289..20301402hypothetical protein
LOC_Os12g33670Os.40360.1.S1_at9/1112+20298289..20301402hypothetical protein
LOC_Os12g33670Os.40360.1.S1_x_at6/1112+20298289..20301402hypothetical protein
LOC_Os12g33680OsAffx.22699.1.S1_x_at1/1112+20302347..20303964retrotransposon protein, putative, unclassified
LOC_Os12g33690OsAffx.447.1.S1_at2/1112+20307905..20312450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33690OsAffx.22947.2.S1_x_at1/1112+20307905..20312450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33690Os.52609.1.S1_at1/1112+20307905..20312450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33700NANA12+20314838..20317749retrotransposon protein, putative, unclassified
LOC_Os12g33710OsAffx.32004.1.S1_at11/1112+20319356..20320162hypothetical protein
LOC_Os12g33720OsAffx.32005.1.S1_at11/1112+20320532..20321130hypothetical protein
LOC_Os12g33730OsAffx.30486.1.S1_at1/1112+20327049..20328454hypothetical protein
LOC_Os12g33740OsAffx.19950.1.S1_at11/1112+20329800..20330480Athila ORF 1, putative
LOC_Os12g33750Os.32823.1.S1_x_at2/1112+20336407..20336790hypothetical protein
LOC_Os12g33760OsAffx.7780.1.S1_x_at11/1112+20341321..20341560hypothetical protein
LOC_Os12g33770OsAffx.7781.1.S1_at10/1112+20342443..20343518hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32005.1.S1_at--1062--9431Chr12:20321026..20321050 (25 bp)
TCGGCTGTTGAACATTCCAGGGCCA
LOC_Os12g33720
OsAffx.32005.1.S1_at--701--10731Chr12:20321019..20321043 (25 bp)
TTGAACATTCCAGGGCCACCTCTAG
LOC_Os12g33720
OsAffx.32005.1.S1_at--786--1751Chr12:20321002..20321026 (25 bp)
ACCTCTAGGCAACATCGATAACATC
LOC_Os12g33720
OsAffx.32005.1.S1_at--890--10311Chr12:20320834..20320938 (25 bp)
TTTCATCAATCACGTCAAACAACAG
LOC_Os12g33720
OsAffx.32005.1.S1_at--557--9351Chr12:20320793..20320817 (25 bp)
TCGCAGCGAGAGTGGCATAGACATC
LOC_Os12g33720
OsAffx.32005.1.S1_at--1067--251Chr12:20320766..20320790 (25 bp)
ATATGCTCCATGTCTATTGCCCAAT
LOC_Os12g33720
OsAffx.32005.1.S1_at--45--10151Chr12:20320731..20320755 (25 bp)
TATCCCCTCCAGTCATCGGTTATCA
LOC_Os12g33720
OsAffx.32005.1.S1_at--1159--2171Chr12:20320690..20320714 (25 bp)
ACACTGCTACATGGCTTGCCACGAG
LOC_Os12g33720
OsAffx.32005.1.S1_at--1110--851Chr12:20320680..20320704 (25 bp)
ATGGCTTGCCACGAGTGCCGATAGC
LOC_Os12g33720
OsAffx.32005.1.S1_at--1012--9131Chr12:20320665..20320689 (25 bp)
TGCCGATAGCTCTTGCCACTGGGAA
LOC_Os12g33720
OsAffx.32005.1.S1_at--502--2391Chr12:20320587..20320611 (25 bp)
AAAAGCCAAAAGCAACCGCCGATGA
LOC_Os12g33720
Target Sequence 
TCGGCTGTTGAACATTCCAGGGCCACCTCTAGGCAACATCGATAACATCAAGCTGAGGATGTTGAGAAGTGCAGCTTTTG
ACCGATGGTGGATAGAATGGAAAAAACATCTATTTCATCAATCACGTCAAACAACAGAATCTTCTCCTCCCCATCGCAGC
GAGAGTGGCATAGACATCCAATATGCTCCATGTCTATTGCCCAATGGTGGTGGCTTATCCCCTCCAGTCATCGGTTATCA
TGCCCCCAAGTCTTCAACACTGCTACATGGCTTGCCACGAGTGCCGATAGCTCTTGCCACTGGGAAGAAGTGGAAAACAA
AATCGGCTGCTGCTCCATCGGCTGCAAAGAAGAAGACCAAAAAGCCAAAAGCAACCGCCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis