Browse Element(s) Details


OsAffx.19953.4.S1_s_at

Description gb:AK103104.1
DB_XREF= gi:32988313
TID=OsAffx.19953.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118O17, full insert sequence.
FL= gb:AK103104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4090011/11expressed protein
LOC_Os04g399001/11Non-cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40870NANA5+23882697..23888339retrotransposon protein, putative, unclassified
LOC_Os05g40880OsAffx.27266.1.S1_at10/115+23891210..23892247hypothetical protein
LOC_Os05g40880OsAffx.20993.1.S1_at1/115+23891210..23892247hypothetical protein
LOC_Os05g40890Os.10823.1.S1_x_at11/115+23895371..23896542expressed protein
LOC_Os05g40890Os.10823.2.S1_at11/115+23895371..23896542expressed protein
LOC_Os05g40900Os.26497.1.S1_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.4583.1.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.4.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.5.S1_x_at11/115+23907303..23911230expressed protein
LOC_Os05g40910Os.51274.1.S1_at9/115+23912941..23914408expressed protein
LOC_Os05g40920Os.56288.1.S1_at11/115+23917060..23919400expressed protein
LOC_Os05g40930NANA5+23923527..23924994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40940OsAffx.25819.2.S1_at11/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.3.S1_at3/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.13875.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40950Os.56225.1.S1_at11/115+23930253..23931294expressed protein
LOC_Os05g40960OsAffx.27267.1.S1_at11/115+23932212..23934242myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19953.4.S1_s_at--64--7711Chr05:23907922..23907946 (25 bp)
GGGTCTTCAATCTGGACCCAGGCAT
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--94--9571Chr05:23907919..23907943 (25 bp)
TCTTCAATCTGGACCCAGGCATGTT
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--850--9432Chr05:23907912..23907936 (25 bp)
TCTGGACCCAGGCATGTTAATTACA
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--366--8111Chr05:23907909..23907933 (25 bp)
GGACCCAGGCATGTTAATTACATCT
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--604--8791Chr05:23907898..23907922 (25 bp)
TGTTAATTACATCTCTGTTTGGCTC
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--589--9471Chr05:23907885..23907909 (25 bp)
TCTGTTTGGCTCTGCCTTCTAGCTG
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--951--8311Chr05:23907878..23907902 (25 bp)
GGCTCTGCCTTCTAGCTGTGCTATA
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--163--4451Chr05:23907872..23907896 (25 bp)
GCCTTCTAGCTGTGCTATACTTTCA
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--397--3232Chr11:23810585..23810605 (21 bp)
CAAGTTCAATTAGGTGTATTTCATA
NONE
OsAffx.19953.4.S1_s_at--106--6891Chr05:23907824..23907848 (25 bp)
GTATTTCATATATATCTACAAGCAT
LOC_Os05g40900
OsAffx.19953.4.S1_s_at--300--9531Chr05:23907810..23907834 (25 bp)
TCTACAAGCATAAAATTTGTCCTAT
LOC_Os05g40900
Target Sequence 
GGGTCTTCAATCTGGACCCAGGCATGTTAATTACATCTCTGTTTGGCTCTGCCTTCTAGCTGTGCTATACTTTCAACGCA
AATCAAGTTCAATTAGGTGTATTTCATATATATCTACAAGCATAAAATTTGTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19953.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis