Browse Element(s) Details


OsAffx.20032.1.S1_at

Description tigr:9640.m03861
TID=OsAffx.20032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3955010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39540OsAffx.29789.3.S1_x_at10/1112+24331678..24336224hAT family dimerisation domain containing protein
LOC_Os12g39540OsAffx.29789.1.S1_x_at6/1112+24331678..24336224hAT family dimerisation domain containing protein
LOC_Os12g39540OsAffx.31885.2.S1_x_at2/1112+24331678..24336224hAT family dimerisation domain containing protein
LOC_Os12g39550OsAffx.20032.1.S1_at10/1112+24356769..24357872hypothetical protein
LOC_Os12g39550OsAffx.9066.1.S1_x_at1/1112+24356769..24357872hypothetical protein
LOC_Os12g39560OsAffx.32098.1.S1_at10/1112+24363395..24367091hypothetical protein
LOC_Os12g39570OsAffx.22940.5.S1_at11/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.2.S1_s_at11/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.2.S1_at9/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.3.S1_x_at9/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.1.S1_s_at8/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.5.S1_x_at8/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570Os.35344.3.S1_x_at6/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570Os.35344.18.S1_x_at5/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.31552.2.S1_at2/1112+24369302..24374170Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20032.1.S1_at--162--3671Chr12:24356805..24356829 (25 bp)
CTTATGGCCATCTATGCCCCGAAAG
LOC_Os12g39550
OsAffx.20032.1.S1_at--711--11Chr12:24356818..24356842 (25 bp)
ATGCCCCGAAAGCATGGGTACCCGG
LOC_Os12g39550
OsAffx.20032.1.S1_at--1141--7831NONE
GGTACCCGGCAGAATAGGATGCATC
NONE
OsAffx.20032.1.S1_at--242--651Chr12:24357390..24357414 (25 bp)
ATGCATCAGGAGTTGCCATGCCACA
LOC_Os12g39550
OsAffx.20032.1.S1_at--592--6691Chr12:24357401..24357425 (25 bp)
GTTGCCATGCCACAAGAATCATGTT
LOC_Os12g39550
OsAffx.20032.1.S1_at--388--5251Chr12:24357416..24357560 (25 bp)
GAATCATGTTCAGATCTGCGAGCAA
LOC_Os12g39550
OsAffx.20032.1.S1_at--468--471Chr12:24357549..24357735 (25 bp)
ATCTGCGAGCAAGAGAGTGGTTTAT
LOC_Os12g39550
OsAffx.20032.1.S1_at--54--6311Chr12:24357768..24357792 (25 bp)
GATGAATTCACAAAGACCACTACTG
LOC_Os12g39550
OsAffx.20032.1.S1_at--918--10471Chr12:24357774..24357798 (25 bp)
TTCACAAAGACCACTACTGTTCCAC
LOC_Os12g39550
OsAffx.20032.1.S1_at--1006--3851Chr12:24357790..24357814 (25 bp)
CTGTTCCACCGTACAACTCGAAGAA
LOC_Os12g39550
OsAffx.20032.1.S1_at--338--2551Chr12:24357804..24357828 (25 bp)
AACTCGAAGAACTCATGGTGCTGCG
LOC_Os12g39550
Target Sequence 
CTTATGGCCATCTATGCCCCGAAAGCATGGGTACCCGGCAGAATAGGATGCATCAGGAGTTGCCATGCCACAAGAATCAT
GTTCAGATCTGCGAGCAAGAGAGTGGTTTATGGTCCAAGGGGTTGGGACAGTGGCAGCCATGTGATGAATTCACAAAGAC
CACTACTGTTCCACCGTACAACTCGAAGAACTCATGGTGCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis