Browse Element(s) Details


OsAffx.32098.1.S1_at

Description tigr:9640.m03862
TID=OsAffx.32098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3956010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39550OsAffx.20032.1.S1_at10/1112+24356769..24357872hypothetical protein
LOC_Os12g39550OsAffx.9066.1.S1_x_at1/1112+24356769..24357872hypothetical protein
LOC_Os12g39560OsAffx.32098.1.S1_at10/1112+24363395..24367091hypothetical protein
LOC_Os12g39570OsAffx.22940.5.S1_at11/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.2.S1_s_at11/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.2.S1_at9/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.3.S1_x_at9/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.1.S1_s_at8/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.5.S1_x_at8/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570Os.35344.3.S1_x_at6/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570Os.35344.18.S1_x_at5/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.31552.2.S1_at2/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39580OsAffx.20380.1.S1_x_at1/1112+24387436..24390846retrotransposon protein, putative, unclassified
LOC_Os12g39580OsAffx.22927.1.S1_x_at1/1112+24387436..24390846retrotransposon protein, putative, unclassified
LOC_Os12g39580OsAffx.22711.4.A1_x_at1/1112+24387436..24390846retrotransposon protein, putative, unclassified
LOC_Os12g39580OsAffx.20380.1.S1_at1/1112+24387436..24390846retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.21171.3.S1_x_at3/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.21171.4.S1_x_at2/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.20729.1.S1_x_at2/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.1674.1.S1_at1/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.21171.4.S1_at1/1112+24391557..24397478retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32098.1.S1_at--960--9371Chr12:24366883..24366907 (25 bp)
TCGAGCTCCGGAACTCAGAGGGTTT
LOC_Os12g39560
OsAffx.32098.1.S1_at--601--6131Chr12:24366866..24366890 (25 bp)
GAGGGTTTCCGGAGCCTAGCAAAAG
LOC_Os12g39560
OsAffx.32098.1.S1_at--44--6231Chr12:24366807..24366831 (25 bp)
GAGGCCTCCGAAGCTCGAGATGCTG
LOC_Os12g39560
OsAffx.32098.1.S1_at--1116--5251Chr12:24366774..24366798 (25 bp)
GAATCGAGCCTCAATATGCCCTCAA
LOC_Os12g39560
OsAffx.32098.1.S1_at--271--4531Chr12:24366757..24366781 (25 bp)
GCCCTCAACGGCTCAAGTTAGGAAT
LOC_Os12g39560
OsAffx.32098.1.S1_at--828--5231Chr12:24366714..24366738 (25 bp)
GAATAAATGCACACTTTGCGCCCCA
LOC_Os12g39560
OsAffx.32098.1.S1_at--197--2651Chr12:24366690..24366714 (25 bp)
AACCACCTCTGAGACTGTCGATGAT
LOC_Os12g39560
OsAffx.32098.1.S1_at--1105--7971NONE
GGATGCCTTTATCCAGGTTGCCCAA
NONE
OsAffx.32098.1.S1_at--135--9291Chr12:24365971..24365995 (25 bp)
TCCGGTGCCTCCTAATTAAGCTTAA
LOC_Os12g39560
OsAffx.32098.1.S1_at--847--4491Chr12:24363627..24363651 (25 bp)
GCCGTGTGAGTATCCTGTTTGAGCA
LOC_Os12g39560
OsAffx.32098.1.S1_at--14--10091Chr12:24363545..24363569 (25 bp)
TAGGGAGCAGCCGACATATATCATC
LOC_Os12g39560
Target Sequence 
TCGAGCTCCGGAACTCAGAGGGTTTCCGGAGCCTAGCAAAAGAACTCCGGAGGCGGCCAGGGACTTCGGAGCTCCGGAGG
CCTCCGAAGCTCGAGATGCTGCCCGGGGCGAATCGAGCCTCAATATGCCCTCAACGGCTCAAGTTAGGAATCAGGCGACT
AGTGGGTTGGAATAAATGCACACTTTGCGCCCCAACCACCTCTGAGACTGTCGATGATGACCAGACGGAGCACGATATTA
CCCGGGGGATGCCTTTATCCAGGTTGCCCAACCTAACACAAGGGCTCCGGTGCCTCCTAATTAAGCTTAACACGTACGTG
CATATAATTCCATGTGGCCGTGTGAGTATCCTGTTTGAGCAGGAGATGATGGTGACCACAACAATGTGTAACACTGGTGA
TGTGGAGATTGGGTTCAGTAGGGAGCAGCCGACATATATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis