Browse Element(s) Details


OsAffx.20038.1.S1_at

Description tigr:9640.m03885
TID=OsAffx.20038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3979010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39740OsAffx.25936.7.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_s_at8/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.1.S1_at7/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.2.S1_x_at4/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39740OsAffx.25936.5.S1_x_at1/1112+24508556..24512040transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39750NANA12+24514183..24514455hypothetical protein
LOC_Os12g39760Os.10827.1.S1_x_at11/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39760Os.46055.2.S1_x_at5/1112+24515064..24518351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39770OsAffx.22944.2.S1_s_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39770OsAffx.22944.4.S1_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39780OsAffx.32100.2.S1_s_at11/1112+24526079..24527905expressed protein
LOC_Os12g39790OsAffx.20038.1.S1_at10/1112+24535667..24539893hypothetical protein
LOC_Os12g39800Os.52959.1.S1_at11/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.19542.3.S1_x_at10/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800Os.51841.1.S1_x_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.9949.1.S1_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.21754.1.S1_x_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20038.1.S1_at--727--10871Chr12:24537980..24538004 (25 bp)
TTGGCTTGCAAACATCATCAACCGT
LOC_Os12g39790
OsAffx.20038.1.S1_at--245--2631Chr12:24537999..24538023 (25 bp)
AACCGTGCATATCTTTTGGCTATCT
LOC_Os12g39790
OsAffx.20038.1.S1_at--341--4951Chr12:24538441..24538465 (25 bp)
GCATTCGAAGCGTTCCATTCTAGGA
LOC_Os12g39790
OsAffx.20038.1.S1_at--507--5331Chr12:24538495..24538519 (25 bp)
GAAGTCATACATGCTGCTGTTGTCA
LOC_Os12g39790
OsAffx.20038.1.S1_at--703--4091NONE
CGACTCCGGCAACTTGACAAGGTCA
NONE
OsAffx.20038.1.S1_at--435--7434Chr12:24539388..24539412 (25 bp)
GTGTATAGACCCCACAGAACAGGCC
LOC_Os12g39790
OsAffx.20038.1.S1_at--802--1651Chr12:24539692..24539716 (25 bp)
AGCGCGCACGGTCATCCAACTAGAT
LOC_Os12g39790
OsAffx.20038.1.S1_at--778--2531Chr12:24539709..24539733 (25 bp)
AACTAGATGATGTTGCACGCTTCAG
LOC_Os12g39790
OsAffx.20038.1.S1_at--1035--6191Chr12:24539740..24539764 (25 bp)
GAGGCAATACAATTCGTCACAAAGT
LOC_Os12g39790
OsAffx.20038.1.S1_at--243--74Chr12:24757641..24757665 (25 bp)
ATTGCAATCCCATTTTCTGATGCTT
NONE
OsAffx.20038.1.S1_at--775--4895Chr12:24539812..24539836 (25 bp)
GCTTATTATAGATTGCAGGCTGCAA
LOC_Os12g39790
Target Sequence 
TTGGCTTGCAAACATCATCAACCGTGCATATCTTTTGGCTATCTTTTCCTCCAATTTTTGTGCAGTAATATTCTTGAGCA
TGGAAGCTATGCAAGAGCAGCATTCGAAGCGTTCCATTCTAGGAACGGAAGCAGCAGAGGATGACTCGTTGATGAAGTCA
TACATGCTGCTGTTGTCAGCGAACGCCGACTCCGGCAACTTGACAAGGTCATTTGCCCTTCCACAACCAATGTGGGACTA
TTCAACAATCTCCCCCTTCACACATTGGTGTCCCTCCCTCAACCCTTCACCGCCCCTTCAACAATCTCCCCCTTCACACA
TTGGTGTCCCTCAGCCCTTCACTGCCCCTTCACCGTGTATAGACCCCACAGAACAGGCCCACGGTCCATCAGCGCGCACG
GTCATCCAACTAGATGATGTTGCACGCTTCAGAAATCAGAGGCAATACAATTCGTCACAAAGTTATATGCTGATCAAAGA
TGGATGGAAATTGCAATCCCATTTTCTGATGCTTATTATAGATTGCAGGCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis