Browse Element(s) Details


OsAffx.20077.1.S1_at

Description tigr:9640.m04066
TID=OsAffx.20077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4151011/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41460OsAffx.32135.1.S1_at11/1112+25654058..25657610hypothetical protein
LOC_Os12g41460Os.54788.1.S1_at2/1112+25654058..25657610hypothetical protein
LOC_Os12g41470OsAffx.20076.1.S1_at11/1112+25658742..25659274hypothetical protein
LOC_Os12g41480NANA12+25661287..25661855hypothetical protein
LOC_Os12g41490Os.9468.2.A1_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490Os.9468.2.A2_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490OsAffx.20077.1.S1_x_at1/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41500Os.9468.1.S1_at11/1112+25668463..25672910thiosulfate sulfurtransferase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_x_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41520OsAffx.20078.1.S1_at10/1112+25679616..25680740receptor-like protein kinase, putative
LOC_Os12g41530OsAffx.20079.1.S1_x_at1/1112+25685019..25687067Protein kinase domain containing protein
LOC_Os12g41540OsAffx.20079.1.S1_x_at11/1112+25689204..25691635lectin protein kinase, putative, expressed
LOC_Os12g41550Os.55384.1.S1_s_at11/1112+25692632..25693149expressed protein
LOC_Os12g41560Os.49172.1.S1_at11/1112+25694108..25695760expressed protein
LOC_Os12g41570OsAffx.7856.1.S1_at11/1112+25696107..25696979hypothetical protein
LOC_Os12g41580OsAffx.32137.1.S1_at11/1112+25702659..25704244hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20077.1.S1_at--236--9271Chr12:25677416..25677440 (25 bp)
TCCTCCTCCTTGAGATCGCCTGTGG
LOC_Os12g41510
OsAffx.20077.1.S1_at--775--10751Chr12:25677293..25677317 (25 bp)
TTGACGCTGCTGACCGGCGGCTCAC
LOC_Os12g41510
OsAffx.20077.1.S1_at--161--4271Chr12:25677269..25677293 (25 bp)
CCGGCGAGTTCGACGGTGGCGAGAT
LOC_Os12g41510
OsAffx.20077.1.S1_at--481--891Chr12:25677192..25677216 (25 bp)
AGGCCGGTGATCAGGCAGGCCATCA
LOC_Os12g41510
OsAffx.20077.1.S1_at--796--3971Chr12:25677188..25677212 (25 bp)
CGGTGATCAGGCAGGCCATCAGCGT
LOC_Os12g41510
OsAffx.20077.1.S1_at--985--3351Chr12:25677101..25677125 (25 bp)
CACCGATTGATGCTTTTGGCTACAC
LOC_Os12g41510
OsAffx.20077.1.S1_at--1113--6591Chr12:25677097..25677121 (25 bp)
GATTGATGCTTTTGGCTACACGTCA
LOC_Os12g41510
OsAffx.20077.1.S1_at--839--631Chr12:25677092..25677116 (25 bp)
ATGCTTTTGGCTACACGTCATCTTT
LOC_Os12g41510
OsAffx.20077.1.S1_at--305--10231Chr12:25677087..25677111 (25 bp)
TTTGGCTACACGTCATCTTTGGCTG
LOC_Os12g41510
OsAffx.20077.1.S1_at--655--8311Chr12:25677084..25677108 (25 bp)
GGCTACACGTCATCTTTGGCTGTGA
LOC_Os12g41510
OsAffx.20077.1.S1_at--937--431Chr12:25677073..25677097 (25 bp)
ATCTTTGGCTGTGACAGGGAGCAGC
LOC_Os12g41510
Target Sequence 
TCCTCCTCCTTGAGATCGCCTGTGGCCGGCGACCGATAATGGCGGACCACCAATCCGAGGTAGACGAAGACCGGATCCAC
CTTGCTCAATGGGTCTGGGATTTGTACGGCAATGGGAGGATTCTTGACGCTGCTGACCGGCGGCTCACCGGCGAGTTCGA
CGGTGGCGAGATGGAGCGTGTCATGGTTGTCGGGCTCTGGTGCGCGCACCCTGACCGGAGCGTGAGGCCGGTGATCAGGC
AGGCCATCAGCGTGCTGAGGGGTGAGGCGCCGCCGCCGAGCCTCCCGGCGAGGATGCCGGTGGCGACGTTCCTGCCACCG
ATTGATGCTTTTGGCTACACGTCATCTTTGGCTGTGACAGGGAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis