Browse Element(s) Details


OsAffx.20213.1.S1_at

Description tigr:9638.m03241
TID=OsAffx.20213.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3642010/11YABBY protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36380Os.35344.3.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380Os.35344.18.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380OsAffx.22940.5.S1_x_at2/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36390OsAffx.30689.1.S1_at9/1110+19120091..19124912multi-copper oxidase type I family protein, putative
LOC_Os10g36400Os.10475.1.A1_at11/1110+19132688..19134422expressed protein
LOC_Os10g36410OsAffx.20214.1.S1_at8/1110+19134449..19138640hypothetical protein
LOC_Os10g36420OsAffx.20213.1.S1_at10/1110+19141658..19145613YABBY protein
LOC_Os10g36420Os.52395.1.S1_x_at1/1110+19141658..19145613YABBY protein
LOC_Os10g36430NANA10+19160027..19166462retrotransposon protein, putative, unclassified
LOC_Os10g36440Os.28943.1.S1_x_at2/1110+19167086..19170306retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0009933biological_processmeristem organization
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0010154biological_processfruit development
GO:0010158biological_processabaxial cell fate specification
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20213.1.S1_at--1149--7111NONE
GTCATCAACAGACCTCCGGAGAAGA
NONE
OsAffx.20213.1.S1_at--522--5071Chr10:19144188..19144212 (25 bp)
GCAGCGTGTGCCATCGGCGTACAAC
LOC_Os10g36420
OsAffx.20213.1.S1_at--587--8351Chr10:19144176..19144197 (22 bp)
GGCGTACAACCGCTTCATCAAGGAC
LOC_Os10g36420
OsAffx.20213.1.S1_at--92--971Chr10:19143548..19143571 (24 bp)
AGGACGAAATCCAACGCATCAAGGC
LOC_Os10g36420
OsAffx.20213.1.S1_at--433--371Chr10:19143531..19143555 (25 bp)
ATCAAGGCTGGCAATCCCGACATCT
LOC_Os10g36420
OsAffx.20213.1.S1_at--271--4091Chr10:19143514..19143538 (25 bp)
CGACATCTCGCACAGGGAGGCCTTC
LOC_Os10g36420
OsAffx.20213.1.S1_at--56--2751Chr10:19143212..19143501 (25 bp)
AAGAACTGGGCACACTTTCCGCACA
LOC_Os10g36420
OsAffx.20213.1.S1_at--1092--10291Chr10:19143197..19143221 (25 bp)
TTTCCGCACATCCACTTTGGACTGA
LOC_Os10g36420
OsAffx.20213.1.S1_at--598--2031Chr10:19143184..19143208 (25 bp)
ACTTTGGACTGATGCCGGATCACCA
LOC_Os10g36420
OsAffx.20213.1.S1_at--848--1451Chr10:19143152..19143175 (24 bp)
AGAAGACCAGCCTGCTTCCTCAGGA
LOC_Os10g36420
OsAffx.20213.1.S1_at--510--2311Chr10:19141703..19141727 (25 bp)
AAAGGAAGGGCTTTATGCAGCGGCA
LOC_Os10g36420
Target Sequence 
GTCATCAACAGACCTCCGGAGAAGAGGCAGCGTGTGCCATCGGCGTACAACCGCTTCATCAAGGACGAAATCCAACGCAT
CAAGGCTGGCAATCCCGACATCTCGCACAGGGAGGCCTTCAGCGCGGCTGCCAAGAACTGGGCACACTTTCCGCACATCC
ACTTTGGACTGATGCCGGATCACCAGGGGCTCAAGAAGACCAGCCTGCTTCCTCAGGATCATCAGAGAAAGGATGGGCTA
CTAAAGGAAGGGCTTTATGCAGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis