Browse Element(s) Details


OsAffx.20281.1.S1_at

Description tigr:9638.m02781
TID=OsAffx.20281.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3207011/11GATA zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g32070OsAffx.20281.1.S1_at11/1110+16518014..16519760GATA zinc finger family protein
LOC_Os10g32080OsAffx.18485.3.S1_at11/1110+16522643..16524163Exostosin family protein
LOC_Os10g32090OsAffx.30633.1.S1_at11/1110+16524730..16525308hypothetical protein
LOC_Os10g32100NANA10+16527337..16527957hypothetical protein
LOC_Os10g32110OsAffx.8050.1.S1_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110OsAffx.8050.1.S1_x_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110Os.46796.2.S1_x_at1/1110+16532458..16533864Exostosin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20281.1.S1_at--9--4331Chr10:16518588..16518695 (25 bp)
CCTTGTTGGATGACGTGGCGTTGGA
LOC_Os10g32070
OsAffx.20281.1.S1_at--336--8471Chr10:16518573..16518596 (24 bp)
TGGCGTTGGATGACGTCGCGGCGAG
LOC_Os10g32070
OsAffx.20281.1.S1_at--277--5951Chr10:16518442..16518466 (25 bp)
GAGAACCGAACGAAGGCGCCCGTGC
LOC_Os10g32070
OsAffx.20281.1.S1_at--1124--5291Chr10:16518326..16518350 (25 bp)
GAAGGAGGAGACACCACCGAACATC
LOC_Os10g32070
OsAffx.20281.1.S1_at--895--8011Chr10:16518323..16518347 (25 bp)
GGAGGAGACACCACCGAACATCACC
LOC_Os10g32070
OsAffx.20281.1.S1_at--723--9091Chr10:16518259..16518283 (25 bp)
TGCTCCACTGCTCTTAACACGGCGG
LOC_Os10g32070
OsAffx.20281.1.S1_at--382--3331Chr10:16518254..16518278 (25 bp)
CACTGCTCTTAACACGGCGGCGAAG
LOC_Os10g32070
OsAffx.20281.1.S1_at--117--4671Chr10:16518184..16518208 (25 bp)
GCGTGGCTGAGTGGTCCGGACAGCC
LOC_Os10g32070
OsAffx.20281.1.S1_at--304--2611Chr10:16518145..16518169 (25 bp)
AACGCGTGCGGGAAGCAGTACAGGA
LOC_Os10g32070
OsAffx.20281.1.S1_at--446--5551Chr10:16518122..16518146 (25 bp)
GAAAGGTCGGCTGGTGCCGGAGTAC
LOC_Os10g32070
OsAffx.20281.1.S1_at--494--6071Chr10:16518103..16518127 (25 bp)
GAGTACCGGCCTCTCAACTGTCCGA
LOC_Os10g32070
Target Sequence 
CCTTGTTGGATGACGTGGCGTTGGATGACGTCGCGGCGAGGGGTGGCGGCGACGCCGGCGAGGCGAAGGAGGAAGAAGAG
GAGCTGGAGTGGCTGTCGAACAAGGACGCGTTCCCGACGGTGGAGACGATGTCGCCGGCGCCGCCGGAGAACCGAACGAA
GGCGCCCGTGCCGCCGGCGGGGTGGCAGTGCCGGCACTGCGGGTCGACGGAGACGCCGCTGTGGCGCGAGCGCGACGGCC
CGGCGGAGGCGGAGCACGTGAGGAAGGAGGAGACACCACCGAACATCACCCCGGCAACCAAACACCGCCGCATCGTCGAC
CTCCTCCGCTGCTCCACTGCTCTTAACACGGCGGCGAAGGCGGTGGAGCGGCGGTGCACGCACTGCGGGACGACGAAGAC
GCCGGCGTGGCTGAGTGGTCCGGACAGCCGCGGCAAGCTGTGCAACGCGTGCGGGAAGCAGTACAGGAAAGGTCGGCTGG
TGCCGGAGTACCGGCCTCTCAACTGTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis