Browse Element(s) Details


OsAffx.203.1.S1_at

Description gb:NM_196225.1
DB_XREF= gi:37533809
TID=OsAffx.203.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNAa0019N10.27), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2440011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein
LOC_Os10g24380NANA10+12157106..12159806hypothetical protein
LOC_Os10g24390OsAffx.20408.1.S1_at10/1110+12166429..12167286hypothetical protein
LOC_Os10g24400OsAffx.203.1.S1_at11/1110+12173621..12180121retrotransposon protein, putative, unclassified
LOC_Os10g24400Os.53111.1.S1_at1/1110+12173621..12180121retrotransposon protein, putative, unclassified
LOC_Os10g24410NANA10+12183906..12184378hypothetical protein
LOC_Os10g24420NANA10+12189522..12196194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24430OsAffx.20947.1.S1_x_at1/1110+12198381..12201140transposon protein, putative, unclassified
LOC_Os10g24440NANA10+12203970..12206121transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.203.1.S1_at--1122--7911Chr10:12179433..12179457 (25 bp)
GGTTGTCTCAAGCACAGCATTGGTA
LOC_Os10g24400
OsAffx.203.1.S1_at--271--8131Chr10:12179483..12179507 (25 bp)
GGAAAATCCCCATATGAAGTCCTTT
LOC_Os10g24400
OsAffx.203.1.S1_at--173--7331Chr10:12179697..12179717 (21 bp)
GTGCAGGTCTATCTTAAGCTTCAAC
LOC_Os10g24400
OsAffx.203.1.S1_at--899--10271Chr10:12179720..12179744 (25 bp)
TTTGCACAGTTGTCCATTGCTCAGC
LOC_Os10g24400
OsAffx.203.1.S1_at--523--71Chr10:12179735..12179759 (25 bp)
ATTGCTCAGCGCTCTTGTCAGAAGA
LOC_Os10g24400
OsAffx.203.1.S1_at--766--7092Chr10:12179841..12179865 (25 bp)
GTCAAATTCATCCTGTGGTCCATGT
LOC_Os10g24400
OsAffx.203.1.S1_at--973--5471Chr10:12179912..12179936 (25 bp)
GAACTACCCTTGCAGATTACGGATG
LOC_Os10g24400
OsAffx.203.1.S1_at--375--6291Chr10:12179933..12179957 (25 bp)
GATGATTCAGTGTTGCTTCAGCCAG
LOC_Os10g24400
OsAffx.203.1.S1_at--273--2351Chr10:12179993..12180017 (25 bp)
AAAGCAGCAGTTCCTTATGGGCTAA
LOC_Os10g24400
OsAffx.203.1.S1_at--785--1591Chr10:12180037..12180061 (25 bp)
AGCTGAACTCGCCACTTGGGAGAAT
LOC_Os10g24400
OsAffx.203.1.S1_at--115--7651Chr10:12180054..12180078 (25 bp)
GGGAGAATCTACGTCACCTGAAGCT
LOC_Os10g24400
Target Sequence 
GGTTGTCTCAAGCACAGCATTGGTACAACACCTCCTTCCATATTGTTCTTGGAAAATCCCCATATGAAGTCCTTTTTGCC
AGGAAACCAACTCATTTTGGAGTGGTGGATGTGGGAAGTAGTACAATTCCTGATGTGCAGGTCTATCTTAAGCTTCAACC
TTTTGCACAGTTGTCCATTGCTCAGCGCTCTTGTCAGAAGATTAGTTTCAGGTACTTTGGACCATATACAGTGTTGGAGC
GTGTTGGGCAAGTGGCCTATCGGCTTGATCTTCCTGCCGGAAGTCAAATTCATCCTGTGGTCCATGTTTCCTTACTTAAA
GCTGCTGTTAAACCTGACACTATTGTTAGTCCTGAACTACCCTTGCAGATTACGGATGATTCAGTGTTGCTTCAGCCAGA
AGTGGTATTGCGCAGAAGTCTCATCAAACGTGGTAAAGCAGCAGTTCCTTATGGGCTAATCCAGTGGACAGGCGTGCCAG
CTGAACTCGCCACTTGGGAGAATCTACGTCACCTGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis