Browse Element(s) Details


OsAffx.20350.1.S1_x_at

Description tigr:9638.m02351
TID=OsAffx.20350.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2740011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27350OsAffx.20351.1.S1_x_at11/1110+14103018..14103776hypothetical protein
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20350.1.S1_x_at--852--8291Chr10:14118362..14118386 (25 bp)
GGCTCGTCCCATCCAAGGAGGCCGC
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--1034--3791Chr10:14118489..14118513 (25 bp)
TCGACGAACGGGAGGAGGCCTTCTC
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--1014--9651Chr10:14118609..14118633 (25 bp)
TCACCCTCGACGTGCAGGCGAACTG
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--54--5771Chr10:14118617..14118641 (25 bp)
GACGTGCAGGCGAACTGCCCTGCAA
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--557--5471Chr10:14118628..14118652 (25 bp)
GAACTGCCCTGCAACTCCTTGATCT
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--574--9011Chr10:14118637..14118661 (25 bp)
TGCAACTCCTTGATCTCCAAGTTCC
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--141--3611Chr10:14118645..14118669 (25 bp)
CTTGATCTCCAAGTTCCTGAACAAT
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--883--10651Chr10:14118658..14118682 (25 bp)
TTCCTGAACAATGGCGGCGAGACGA
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--365--8531Chr10:14118691..14118715 (25 bp)
TGGACGTGGTTGACCTCGTGGTCTC
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--727--4651Chr10:14118733..14118757 (25 bp)
GCGTCGAGGATCTCCGCGTCCGCGT
LOC_Os10g27400
OsAffx.20350.1.S1_x_at--1077--4631Chr10:14118748..14118772 (25 bp)
GCGTCCGCGTTGTCCCCTGCAGGTA
LOC_Os10g27400
Target Sequence 
GGCTCGTCCCATCCAAGGAGGCCGCGTCGACCGGCGCGCTCTCGCGGCGGCGGGGCTCGCTCTGGCGGCGCCGTCAACCT
CGCCGCGCGCGTCTACTTCGACGGCGGGGTCAGCCGCAGCGTCAGCCTCGACGAACGGGAGGAGGCCTTCTCCTCCCGCC
GCGACGCCTTCGTCCGCGCCTCGCCAGGCGGCGTTCGCGGCGGCCGCCCCGCCGGAGGCAACGGCGGCTGCCGCGGCGTC
ACCAGGCTCACCCTCGACGTGCAGGCGAACTGCCCTGCAACTCCTTGATCTCCAAGTTCCTGAACAATGGCGGCGAGACG
ACGGCGAGGTGGACGTGGTTGACCTCGTGGTCTCCCACCCTGCGGCGCGCCGCGTCGAGGATCTCCGCGTCCGCGTTGTC
CCCTGCAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20350.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis