Browse Element(s) Details


OsAffx.20366.1.S1_x_at

Description gb:NM_196381.1
DB_XREF= gi:37534121
TID=OsAffx.20366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0050N08.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g349001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34860Os.11361.1.S1_at11/112+20908008..20913251Regulator of chromosome condensation family protein, expressed
LOC_Os02g34870NANA2+20913392..20914524expressed protein
LOC_Os02g34884Os.10376.1.S1_at11/112+20915571..20926938SacI homology domain containing protein, expressed
LOC_Os02g34900OsAffx.20366.1.S1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34900Os.20851.1.A1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34910OsAffx.2862.1.S1_at11/112+20941586..20942223hypothetical protein
LOC_Os02g34920OsAffx.2863.1.S1_at10/112+20943949..20946184hypothetical protein
LOC_Os02g34920Os.26886.3.S1_x_at2/112+20943949..20946184hypothetical protein
LOC_Os02g34930OsAffx.12354.1.S1_x_at11/112+20949450..20950151hypothetical protein
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20366.1.S1_x_at--569--1851Chr10:13202005..13202029 (25 bp)
ACGACGGCGGTAGATCTGACGCGAC
NONE
OsAffx.20366.1.S1_x_at--594--1931Chr10:13202008..13202032 (25 bp)
ACGGCGGTAGATCTGACGCGACTAC
NONE
OsAffx.20366.1.S1_x_at--974--4671Chr10:13202011..13202035 (25 bp)
GCGGTAGATCTGACGCGACTACGGT
NONE
OsAffx.20366.1.S1_x_at--433--10031Chr10:13202015..13202039 (25 bp)
TAGATCTGACGCGACTACGGTGGCG
NONE
OsAffx.20366.1.S1_x_at--844--471Chr10:13202018..13202042 (25 bp)
ATCTGACGCGACTACGGTGGCGTCT
NONE
OsAffx.20366.1.S1_x_at--234--5711Chr10:13202027..13202051 (25 bp)
GACTACGGTGGCGTCTTCGGCTTGA
NONE
OsAffx.20366.1.S1_x_at--144--1931Chr10:13202031..13202055 (25 bp)
ACGGTGGCGTCTTCGGCTTGATGAT
NONE
OsAffx.20366.1.S1_x_at--676--8371Chr10:13202036..13202056 (21 bp)
GGCGTCTTCGGCTTGATGATGATCA
NONE
OsAffx.20366.1.S1_x_at--65--88527Chr12:18476890..18476911 (22 bp)
TGATCAAACTAACTGGCACGCTCTG
NONE
OsAffx.20366.1.S1_x_at--635--9796Chr10:13203465..13203489 (25 bp)
TAACTGGCACGCTCTGAACCCGATT
NONE
OsAffx.20366.1.S1_x_at--923--5092Chr10:13203471..13203495 (25 bp)
GCACGCTCTGAACCCGATTGATAGG
NONE
Target Sequence 
ACGACGGCGGTAGATCTGACGCGACTACGGTGGCGTCTTCGGCTTGATGATGATCAAACTAACTGGCACGCTCTGAACCC
GATTGATAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20366.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis