Browse Element(s) Details


OsAffx.20429.1.S1_at

Description gb:NM_196161.1
DB_XREF= gi:37533681
TID=OsAffx.20429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0095C06.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23004OsAffx.18355.1.S1_at11/1110+11662463..11665658hypothetical protein
LOC_Os10g23020NANA10+11669997..11670275hypothetical protein
LOC_Os10g23030OsAffx.6743.1.S1_at11/1110+11674593..11678357hypothetical protein
LOC_Os10g23030Os.54455.1.S1_at1/1110+11674593..11678357hypothetical protein
LOC_Os10g23039NANA10+11682308..11682780NA
LOC_Os10g23050Os.46600.1.S1_at11/1110+11684489..11686279Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed
LOC_Os10g23100Os.6444.1.S1_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23100Os.6444.2.S1_x_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20429.1.S1_at--527--8551Chr10:11690579..11690660 (25 bp)
TGGATCGCATGTTGCCGGCCGCTGA
LOC_Os10g23060
OsAffx.20429.1.S1_at--1114--6651Chr10:11690646..11690670 (25 bp)
GTTGCCGGCCGCTGAGTTTGCCGTC
LOC_Os10g23060
OsAffx.20429.1.S1_at--137--4751Chr10:11690656..11690680 (25 bp)
GCTGAGTTTGCCGTCGTGGTGTCAT
LOC_Os10g23060
OsAffx.20429.1.S1_at--665--10691Chr10:11690663..11690687 (25 bp)
TTGCCGTCGTGGTGTCATGTGCAGA
LOC_Os10g23060
OsAffx.20429.1.S1_at--204--7751Chr10:11690673..11690697 (25 bp)
GGTGTCATGTGCAGAGAGGCCACCA
LOC_Os10g23060
OsAffx.20429.1.S1_at--442--9551Chr10:11690773..11690797 (25 bp)
TCTTCACCTGGTACACAGCTAGCCA
LOC_Os10g23060
OsAffx.20429.1.S1_at--340--8591Chr10:11690781..11690805 (25 bp)
TGGTACACAGCTAGCCAGCCCGTCG
LOC_Os10g23060
OsAffx.20429.1.S1_at--1107--9331Chr10:11690803..11691114 (25 bp)
TCGCGCGCTGGCAAGATTGGTCGTC
LOC_Os10g23060
OsAffx.20429.1.S1_at--743--4571Chr10:11691099..11691118 (20 bp)
GCGCTGGCAAGATTGGTCGTCGTCC
LOC_Os10g23060
OsAffx.20429.1.S1_at--283--3911Chr10:11691099..11691121 (23 bp)
CTGGCAAGATTGGTCGTCGTCCTCG
LOC_Os10g23060
OsAffx.20429.1.S1_at--1031--4331Chr10:11691125..11691149 (25 bp)
CCATGGCGCCGTTCTTGCAGTCCAA
LOC_Os10g23060
Target Sequence 
TGGATCGCATGTTGCCGGCCGCTGAGTTTGCCGTCGTGGTGTCATGTGCAGAGAGGCCACCACCGGCGGCGGCGGCGGCG
GCGCGGCGGACACGGGAGGATCACCGCGCCGGCATGGCAAAGAAGGAACAGCCCCTCTCTTCACCTGGTACACAGCTAGC
CAGCCCGTCGCGCGCTGGCAAGATTGGTCGTCGTCCTCGCCGCCATGGCGCCGTTCTTGCAGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis