Browse Element(s) Details


OsAffx.20446.1.S1_at

Description tigr:9638.m01861
TID=OsAffx.20446.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2211011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22060OsAffx.8218.1.S1_at11/1110+11061335..11065242hypothetical protein
LOC_Os10g22070NANA10+11066947..11067693Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g22080OsAffx.8217.1.S1_x_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080OsAffx.8217.1.S1_at11/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.57369.1.S1_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22080Os.15513.2.S1_x_at1/1110+11073327..11077544hypothetical protein
LOC_Os10g22090OsAffx.30493.1.S1_at11/1110+11077961..11078332hypothetical protein
LOC_Os10g22100Os.15513.1.S1_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100Os.15513.2.S1_x_at11/1110+11082931..11085694expressed protein
LOC_Os10g22100OsAffx.8217.1.S1_x_at6/1110+11082931..11085694expressed protein
LOC_Os10g22110OsAffx.20446.1.S1_at11/1110+11087332..11089941hypothetical protein
LOC_Os10g22130OsAffx.29724.1.S1_x_at11/1110+11096351..11101516hypothetical protein
LOC_Os10g22130OsAffx.29724.3.S1_x_at2/1110+11096351..11101516hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_x_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22140OsAffx.29724.2.S1_at11/1110+11102773..11105752hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_at3/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.30496.1.S1_x_at2/1110+11108438..11108830hypothetical protein
LOC_Os10g22150OsAffx.20673.1.S1_x_at1/1110+11108438..11108830hypothetical protein
LOC_Os10g22160OsAffx.8215.1.S1_at11/1110+11114208..11114690retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20446.1.S1_at--503--9591Chr10:11089610..11089634 (25 bp)
TCATTGGGACCACCGGAAATCACTT
LOC_Os10g22110
OsAffx.20446.1.S1_at--551--5211Chr10:11089538..11089562 (25 bp)
GAATAGTAATGCTTCCGTACCTCCT
LOC_Os10g22110
OsAffx.20446.1.S1_at--398--4231Chr10:11089150..11089548 (25 bp)
CCGTACCTCCTAAAATGACCACATT
LOC_Os10g22110
OsAffx.20446.1.S1_at--572--5851Chr10:11089134..11089158 (25 bp)
GACCACATTTGCTGGAGGTGTATCA
LOC_Os10g22110
OsAffx.20446.1.S1_at--1063--1031Chr10:11089119..11089143 (25 bp)
AGGTGTATCATCCATGCAGGCGCAT
LOC_Os10g22110
OsAffx.20446.1.S1_at--1084--8511Chr10:11089095..11089119 (25 bp)
TGGACCAACTGACCACCATATACAT
LOC_Os10g22110
OsAffx.20446.1.S1_at--404--6251Chr10:11089058..11089082 (25 bp)
GATGGATTTGGTCCCTCTATGAACC
LOC_Os10g22110
OsAffx.20446.1.S1_at--160--2531Chr10:11089008..11089032 (25 bp)
AACTTTCTCAACTATATGCCCTTAT
LOC_Os10g22110
OsAffx.20446.1.S1_at--1052--9151Chr10:11088994..11089016 (23 bp)
TGCCCTTATAACTTCTCTCATGGAG
LOC_Os10g22110
OsAffx.20446.1.S1_at--119--4951Chr10:11088568..11088592 (25 bp)
GCATTATCTCTGGTTGTGGAACCAA
LOC_Os10g22110
OsAffx.20446.1.S1_at--1094--6711Chr10:11088523..11088547 (25 bp)
GTTCTGATTGTTGATCTACACCGTA
LOC_Os10g22110
Target Sequence 
TCATTGGGACCACCGGAAATCACTTAATTATGTAGGAAAGAGATGTGGAAATCCTATGATATATGCAACTGAGAATAGTA
ATGCTTCCGTACCTCCTAAAATGACCACATTTGCTGGAGGTGTATCATCCATGCAGGCGCATGGACCAACTGACCACCAT
ATACATCCTCCTTTCAAGGATGGATTTGGTCCCTCTATGAACCAAACAAGTTTTTTTTGTTCGAGAACAACTTTCTCAAC
TATATGCCCTTATAACTTCTCTCATGGAGTAAAGCCAGAGAGGCTGGTACAGGGTCTATCTCCTAGATATTGTGCATTAT
CTCTGGTTGTGGAACCAAATATGTATCCAGAGATAAATGTTCTGATTGTTGATCTACACCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis