Browse Element(s) Details


OsAffx.20488.1.S1_at

Description gb:NM_195892.1
DB_XREF= gi:37533143
TID=OsAffx.20488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0045C13.1), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2044011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20400OsAffx.8254.1.S1_at11/1110+9927408..9930812retrotransposon protein, putative, unclassified
LOC_Os10g20410Os.45976.1.S1_x_at5/1110+9931979..9935144transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20420NANA10+9939731..9940222hypothetical protein
LOC_Os10g20430Os.46306.1.S1_x_at6/1110+9941426..9946497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20440OsAffx.20488.1.S1_at11/1110+9955022..9960740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20450Os.7350.1.S1_at11/1110+9961832..9964513MATE efflux family protein, expressed
LOC_Os10g20460OsAffx.30461.1.S1_at10/1110+9965696..9967221hypothetical protein
LOC_Os10g20470Os.5049.1.S1_at11/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20470OsAffx.30725.5.S1_x_at1/1110+9970261..9973000MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20488.1.S1_at--433--4191Chr10:9960628..9960652 (25 bp)
CCCGTTGCTGCATCAGTTTGTCGAG
LOC_Os10g20440
OsAffx.20488.1.S1_at--1015--4031Chr10:9960630..9960654 (25 bp)
CGTTGCTGCATCAGTTTGTCGAGCA
LOC_Os10g20440
OsAffx.20488.1.S1_at--990--10711Chr10:9960632..9960656 (25 bp)
TTGCTGCATCAGTTTGTCGAGCAGG
LOC_Os10g20440
OsAffx.20488.1.S1_at--703--10711Chr10:9960645..9960669 (25 bp)
TTGTCGAGCAGGCATAATAGAAGCA
LOC_Os10g20440
OsAffx.20488.1.S1_at--240--5011Chr10:9960652..9960676 (25 bp)
GCAGGCATAATAGAAGCAGTTTGTA
LOC_Os10g20440
OsAffx.20488.1.S1_at--788--5391Chr10:9960664..9960688 (25 bp)
GAAGCAGTTTGTATGTGTTCTACTT
LOC_Os10g20440
OsAffx.20488.1.S1_at--968--10111Chr10:9960675..9960699 (25 bp)
TATGTGTTCTACTTCTTACTCTCTC
LOC_Os10g20440
OsAffx.20488.1.S1_at--147--8671Chr10:9960677..9960701 (25 bp)
TGTGTTCTACTTCTTACTCTCTCCA
LOC_Os10g20440
OsAffx.20488.1.S1_at--1008--8791Chr10:9960679..9960703 (25 bp)
TGTTCTACTTCTTACTCTCTCCATT
LOC_Os10g20440
OsAffx.20488.1.S1_at--284--9891Chr10:9960684..9960708 (25 bp)
TACTTCTTACTCTCTCCATTCTCGA
LOC_Os10g20440
OsAffx.20488.1.S1_at--838--3651Chr10:9960686..9960710 (25 bp)
CTTCTTACTCTCTCCATTCTCGAGA
LOC_Os10g20440
Target Sequence 
CCCGTTGCTGCATCAGTTTGTCGAGCAGGCATAATAGAAGCAGTTTGTATGTGTTCTACTTCTTACTCTCTCCATTCTCG
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis