Browse Element(s) Details


OsAffx.20504.1.S1_x_at

Description gb:NM_195833.1
DB_XREF= gi:37533025
TID=OsAffx.20504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1923011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified
LOC_Os10g19230OsAffx.20504.1.S1_x_at11/1110+9458096..9460390hypothetical protein
LOC_Os10g19240OsAffx.8267.1.S1_at9/1110+9465925..9467938retrotransposon protein, putative, LINE subclass
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein
LOC_Os10g19270Os.52238.1.S1_at4/1110+9482486..9485306retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20504.1.S1_x_at--315--1151Chr10:9459798..9459822 (25 bp)
AGTCCCATGTAGCAGTTGGCTCCTA
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--1157--1451Chr10:9459852..9459876 (25 bp)
AGAAGGGCACTCACATGTTCGACAC
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--503--6711Chr10:9459868..9459892 (25 bp)
GTTCGACACCGAGACGCAGCAATGG
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--227--8951Chr10:9459904..9459928 (25 bp)
TGACAAAGACCTGCCTTTCATCGGA
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--620--9851Chr10:9459998..9460022 (25 bp)
TACAAGATCGATGTCTCTGTCTCCT
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--122--5031Chr10:9460049..9460073 (25 bp)
GCAGGGCACATGTACTCTTTGTCAA
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--687--9371Chr10:9460077..9460101 (25 bp)
TCGAGATCCAAATGCTGACCTACTT
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--1103--9731Chr10:9460137..9460161 (25 bp)
TAATTTCCTTTGATTACCCTGCTGG
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--745--3251Chr10:9460162..9460186 (25 bp)
CAACCCTGGCTTATGTTCACTTAAT
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--449--9691Chr10:9460204..9460228 (25 bp)
TCACATATCCTTCGATTTTCCTCAA
LOC_Os10g19230
OsAffx.20504.1.S1_x_at--250--6831Chr10:9460322..9460346 (25 bp)
GTTTACAGCATCTATGATCCACTCC
LOC_Os10g19230
Target Sequence 
AGTCCCATGTAGCAGTTGGCTCCTACATTCTGCTGTCCATAACCGGGCACGGCCAGAAGGGCACTCACATGTTCGACACC
GAGACGCAGCAATGGGCCAAACTAGATGACAAAGACCTGCCTTTCATCGGACGTGCCATCCCTCTTCAGGGAACACTACT
CTTCCTTGGCTCATCGAACACTAGCGACGAAATCACTGCTTACAAGATCGATGTCTCTGTCTCCTCCGTTGCAAGCCCAA
GCACCATCACAGCAGGGCACATGTACTCTTTGTCAATTGTCGAGATCCAAATGCTGACCTACTTGGAGGACGAGGAGGAG
ATTGTTACCGGTTGCAAATTAATTTCCTTTGATTACCCTGCTGGCAACCCTGGCTTATGTTCACTTAATTGGGTCAACAA
TGACCCTCACATATCCTTCGATTTTCCTCAACACGTGGGGGAGCTTGTCACCATTAGAGCATACTCAAATGTGGATTACC
TCGAGTCCACTCGTGCCCTAGTGATCTCCAACCAATGGAAACAGGTTTACAGCATCTATGATCCACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20504.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis