Browse Element(s) Details


OsAffx.20536.2.S1_x_at

Description tigr:9638.m01494
TID=OsAffx.20536.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1801011/11hypothetical protein
LOC_Os10g102702/11hypothetical protein
LOC_Os10g180262/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g102601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17980Os.26886.6.S1_s_at11/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980Os.26886.2.S1_s_at9/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980OsAffx.16467.1.S1_at9/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17990Os.23342.1.S1_at11/1110+8789197..8795159Phosphatidate cytidylyltransferase, putative, expressed
LOC_Os10g18010OsAffx.20536.2.S1_x_at11/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20536.2.S1_at11/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20536.1.S1_x_at3/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20666.1.S1_x_at1/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.30370.1.S1_x_at1/1110+8806862..8807686hypothetical protein
LOC_Os10g18026OsAffx.20536.1.S1_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.1.S1_x_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20666.1.S1_x_at4/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.2.S1_x_at2/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.30370.1.S1_x_at1/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18042Os.46306.1.S1_x_at2/1110+8812471..8814672transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18060OsAffx.20535.1.S1_at11/1110+8820983..8826396retrotransposon protein, putative, unclassified
LOC_Os10g18070OsAffx.18282.1.S1_s_at11/1110+8826982..8833441expressed protein
LOC_Os10g18070Os.46184.1.A1_at11/1110+8826982..8833441expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20536.2.S1_x_at--202--8071Chr10:8807425..8807449 (25 bp)
GGAGAAGACGGCAGCCCGACCTCCA
LOC_Os10g18010
OsAffx.20536.2.S1_x_at--161--2772Chr10:5412406..5412429 (24 bp)
AAGACCGTGGTCGAGTTGCTCCGCG
LOC_Os10g10270
OsAffx.20536.2.S1_x_at--1162--4731Chr10:8807363..8807387 (25 bp)
GCTGCAAACCGTGCCGATGACGGTT
LOC_Os10g18010
OsAffx.20536.2.S1_x_at--408--4511Chr10:8807351..8807375 (25 bp)
GCCGATGACGGTTCCAGACGCTGGA
LOC_Os10g18010
OsAffx.20536.2.S1_x_at--477--393Chr10:8808402..8808426 (25 bp)
ATCAGCGGCCTGAGGAAGCACTCGT
LOC_Os10g18026
OsAffx.20536.2.S1_x_at--626--4152Chr10:5412539..5412563 (25 bp)
CGCCGCGCTCTACAAGAACTGGAAG
LOC_Os10g10270
OsAffx.20536.2.S1_x_at--936--1932Chr10:8808467..8808490 (24 bp)
ACTGGAAGGCGCTGGTCGACGAACA
LOC_Os10g18026
OsAffx.20536.2.S1_x_at--800--5851Chr10:8807188..8807212 (25 bp)
GACCAAGACTGCCTCTGTGCACTCG
LOC_Os10g18010
OsAffx.20536.2.S1_x_at--306--1471Chr10:8807145..8807169 (25 bp)
AGAAGGCAAACACGCCGCCGGCTGC
LOC_Os10g18010
OsAffx.20536.2.S1_x_at--51--1411Chr10:8807088..8807112 (25 bp)
AGACGGCATCGAACAAGCGCGAGGA
LOC_Os10g18010
OsAffx.20536.2.S1_x_at--189--6171Chr10:8806999..8807023 (25 bp)
GAGGATGCCGCGTCTGCCAAGAAGC
LOC_Os10g18010
Target Sequence 
GGAGAAGACGGCAGCCCGACCTCCAACTCGTCGGAGAAGACCGTGGTCGAGTTGCTCCGCGCGCTGCAAACCGTGCCGAT
GACGGTTCCAGACGCTGGAGGCGAGCAAGATCGGCAAGACGATCAGCGGCCTGAGGAAGCACTCGTTGGAGCAGGTGCGC
GATCTCGCCGCCGCGCTCTACAAGAACTGGAAGGCGCTGGTCGACGAACACCTGACCAGGAAGCCGCCGGCGCCGCCGAC
CAAGACTGCCTCTGTGCACTCGCCGCGGCCGATCGCGCCAAGAAGGCAAACACGCCGCCGGCTGCTCAAAAGCCGGCGCC
AACGGCGTCGCCGAAGAAGACGGCATCGAACAAGCGCGAGGAGGCGCCGGCGCTCGTGGACGAGGCGAAGCTTGCGGTAG
CGAAGCGCAAGCTCCAGGAGGGCTACGAGGATGCCGCGTCTGCCAAGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20536.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis