Browse Element(s) Details


OsAffx.20598.1.S1_at

Description gb:NM_195472.1
DB_XREF= gi:37532303
TID=OsAffx.20598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OJ1004_F02.14), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1396011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13914Os.46709.1.S1_x_at11/1110+7322725..7329235expressed protein
LOC_Os10g13914Os.39297.1.S1_at11/1110+7322725..7329235expressed protein
LOC_Os10g13930OsAffx.31892.1.S1_x_at11/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_x_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13940Os.46062.1.S1_at11/1110+7339186..7345035MATE efflux family protein, putative, expressed
LOC_Os10g13950OsAffx.30032.1.S1_at11/1110+7345723..7347994hypothetical protein
LOC_Os10g13950OsAffx.16416.1.S1_x_at1/1110+7345723..7347994hypothetical protein
LOC_Os10g13960OsAffx.20598.1.S1_at11/1110+7349743..7354208retrotransposon protein, putative, unclassified, expressed
LOC_Os10g13970Os.48032.1.S1_at11/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13970OsAffx.31524.1.S1_x_at1/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13970OsAffx.19417.2.S1_x_at1/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13980NANA10+7366103..7372198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13990NANA10+7372514..7375455retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14004OsAffx.8351.1.S1_at11/1110+7378135..7378344NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20598.1.S1_at--820--10131Chr10:7350288..7350312 (25 bp)
TATGCCAAGCGCTACTATGATCAGA
LOC_Os10g13960
OsAffx.20598.1.S1_at--142--2891Chr10:7350177..7350201 (25 bp)
AAGGGCAAGCTTCGTCCTCGCTTCT
LOC_Os10g13960
OsAffx.20598.1.S1_at--477--9591Chr10:7350128..7350152 (25 bp)
TCATCAACGAGGTGGCGTATCGCCT
LOC_Os10g13960
OsAffx.20598.1.S1_at--703--5631Chr10:7350088..7350112 (25 bp)
GACACGGCTTCATGATGTGTTCCAT
LOC_Os10g13960
OsAffx.20598.1.S1_at--863--8671Chr10:7350073..7350097 (25 bp)
TGTGTTCCATGTCGGACTGCTCAAG
LOC_Os10g13960
OsAffx.20598.1.S1_at--1099--3231Chr10:7350052..7350076 (25 bp)
CAAGCCGTTCGTGGGTGTGTCGCCA
LOC_Os10g13960
OsAffx.20598.1.S1_at--259--10291Chr10:7350013..7350037 (25 bp)
TTTGCCACCCATTCAGCATGGAGCG
LOC_Os10g13960
OsAffx.20598.1.S1_at--47--9171Chr10:7349939..7349963 (25 bp)
TGCGCCAGCTTCTGGTTCAATGGGA
LOC_Os10g13960
OsAffx.20598.1.S1_at--269--10491Chr10:7349924..7349948 (25 bp)
TTCAATGGGAAGGACTGCCGGCATC
LOC_Os10g13960
OsAffx.20598.1.S1_at--692--10691Chr10:7349880..7349904 (25 bp)
TTGGACGACTTTCGCAACCGATATC
LOC_Os10g13960
OsAffx.20598.1.S1_at--1135--4771Chr10:7349845..7349869 (25 bp)
GCTCGCGGACGAGCTACTGATCGAG
LOC_Os10g13960
Target Sequence 
TATGCCAAGCGCTACTATGATCAGAAGCACCGGGAGGTGTCGTTCGAGGTGGGGGCGTGGGTGTGGCTCCGCGTTCGCCA
CCGCGTTCCTGCGTCCCTCCCGGAGGCTGTCAAGGGCAAGCTTCGTCCTCGCTTCTACGGGCCATACCGCGTCGTCGCCG
TCATCAACGAGGTGGCGTATCGCCTCGCATTGCCGCCGGGGACACGGCTTCATGATGTGTTCCATGTCGGACTGCTCAAG
CCGTTCGTGGGTGTGTCGCCATCGGCACCACTGGCTTTGCCACCCATTCAGCATGGAGCGGCCCAACCTGTTCCTCGCCA
AGTGTTGCGCGCCCGTTTGGCTCGAGGGGTGCGCCAGCTTCTGGTTCAATGGGAAGGACTGCCGGCATCGGCCACATCTT
GGGAGGACTTGGACGACTTTCGCAACCGATATCCCTCGTTCCAGCTCGCGGACGAGCTACTGATCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis