Browse Element(s) Details


OsAffx.20683.1.S1_at

Description tigr:9638.m00842
TID=OsAffx.20683.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0969011/11wall-associated kinase 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09630OsAffx.30358.1.S1_at11/1110+4979240..4980064hypothetical protein
LOC_Os10g09640OsAffx.18193.1.S1_at11/1110+4981313..4982152hypothetical protein
LOC_Os10g09640OsAffx.26961.1.S1_x_at1/1110+4981313..4982152hypothetical protein
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09660OsAffx.18194.1.S1_at11/1110+4995519..4996697hypothetical protein
LOC_Os10g09670OsAffx.20684.1.S1_at11/1110+4997582..4998907hypothetical protein
LOC_Os10g09680OsAffx.8432.1.S1_at11/1110+5000281..5001416hypothetical protein
LOC_Os10g09690OsAffx.20683.1.S1_at11/1110+5003652..5004776wall-associated kinase 4, putative
LOC_Os10g09700OsAffx.20682.1.S1_at11/1110+5008228..5011320Protein kinase domain containing protein
LOC_Os10g09710OsAffx.20681.1.S1_at1/1110+5013505..5013986hypothetical protein
LOC_Os10g09720NANA10+5023746..5025995retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20683.1.S1_at--426--2351Chr10:5004100..5004124 (25 bp)
AAAGCCTCAACTTCTCGACGACGTT
LOC_Os10g09690
OsAffx.20683.1.S1_at--826--10591Chr10:5004129..5004153 (25 bp)
TTCTCCGCGACGAGGAACGTGCTGT
LOC_Os10g09690
OsAffx.20683.1.S1_at--648--4351Chr10:5004164..5004188 (25 bp)
CCAGAGCGTGAGAGCCCGGATCGAC
LOC_Os10g09690
OsAffx.20683.1.S1_at--622--7391Chr10:5004192..5004216 (25 bp)
GTGATGAGCGGCACAAACTACTCCG
LOC_Os10g09690
OsAffx.20683.1.S1_at--894--1531Chr10:5004348..5004372 (25 bp)
AGCATGTGGGAGACGTTCCCGTGCA
LOC_Os10g09690
OsAffx.20683.1.S1_at--462--1311Chr10:5004391..5004415 (25 bp)
AGAGGTCGTGGTACAACTTCTCCCT
LOC_Os10g09690
OsAffx.20683.1.S1_at--229--4271Chr10:5004413..5004437 (25 bp)
CCTGCAGGACCTTTACGGATACGAT
LOC_Os10g09690
OsAffx.20683.1.S1_at--267--5691Chr10:5004480..5004504 (25 bp)
GACTTCGCCATCAGGAATGAATCTT
LOC_Os10g09690
OsAffx.20683.1.S1_at--19--6951Chr10:5004541..5004565 (25 bp)
GTAGTAGCAACAGCCTCTGCGTCAA
LOC_Os10g09690
OsAffx.20683.1.S1_at--982--5851Chr10:5004569..5004593 (25 bp)
GACCAACGGCCAGGGATATGTCTGC
LOC_Os10g09690
OsAffx.20683.1.S1_at--351--1071Chr10:5004613..5004637 (25 bp)
AGGGCAACCCGTATCTACCAGATGG
LOC_Os10g09690
Target Sequence 
AAAGCCTCAACTTCTCGACGACGTTCCTCTTCTCCGCGACGAGGAACGTGCTGTTGGGCGTCGGCCAGAGCGTGAGAGCC
CGGATCGACGGCGTGATGAGCGGCACAAACTACTCCGCCGCCTGCAACTCGCTGTTCGACACGCCGGCGAAGGCGGAGAA
CGGGACGTGCATGGGGCTCGGCTGCTGCGAGGCGGAGCTCGCGCCGGAGCTTGGCATGATCACGGTCTCTATGTACAAGC
AGAGCAACAGCATGTGGGAGACGTTCCCGTGCACCTACGCCATGGTGGTCGAGAGGTCGTGGTACAACTTCTCCCTGCAG
GACCTTTACGGATACGATGTTCTCGACAAGAAATTTCCCGGCGGAGTGCCGCTTGTGCTCGACTTCGCCATCAGGAATGA
ATCTTGTCCAGCAGAAGGCAAACCGTTGCCCACGGCTTGCCGTAGTAGCAACAGCCTCTGCGTCAACACGACCAACGGCC
AGGGATATGTCTGCAAGTGCCAGGAAGGTTACGAGGGCAACCCGTATCTACCAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis