Browse Element(s) Details


OsAffx.20684.1.S1_at

Description tigr:9638.m00840
TID=OsAffx.20684.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0967011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09630OsAffx.30358.1.S1_at11/1110+4979240..4980064hypothetical protein
LOC_Os10g09640OsAffx.18193.1.S1_at11/1110+4981313..4982152hypothetical protein
LOC_Os10g09640OsAffx.26961.1.S1_x_at1/1110+4981313..4982152hypothetical protein
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09660OsAffx.18194.1.S1_at11/1110+4995519..4996697hypothetical protein
LOC_Os10g09670OsAffx.20684.1.S1_at11/1110+4997582..4998907hypothetical protein
LOC_Os10g09680OsAffx.8432.1.S1_at11/1110+5000281..5001416hypothetical protein
LOC_Os10g09690OsAffx.20683.1.S1_at11/1110+5003652..5004776wall-associated kinase 4, putative
LOC_Os10g09700OsAffx.20682.1.S1_at11/1110+5008228..5011320Protein kinase domain containing protein
LOC_Os10g09710OsAffx.20681.1.S1_at1/1110+5013505..5013986hypothetical protein
LOC_Os10g09720NANA10+5023746..5025995retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20684.1.S1_at--8--5171Chr10:4997903..4997923 (21 bp)
GCAAGCAGCCGGATTGGCTACCAGA
LOC_Os10g09670
OsAffx.20684.1.S1_at--241--2871Chr10:4997935..4997959 (25 bp)
AAGGGCCACCAGATGCCGTCGATGT
LOC_Os10g09670
OsAffx.20684.1.S1_at--920--4491Chr10:4997949..4997973 (25 bp)
GCCGTCGATGTGCACCAATGGGATC
LOC_Os10g09670
OsAffx.20684.1.S1_at--504--10531Chr10:4997994..4998018 (25 bp)
TTCAGCACCACGATGCTGCCATTAC
LOC_Os10g09670
OsAffx.20684.1.S1_at--141--9971Chr10:4998016..4998228 (25 bp)
TACCCGCCACAAATGAATGCTACTG
LOC_Os10g09670
OsAffx.20684.1.S1_at--351--7731Chr10:4998559..4998583 (25 bp)
GGATATTACCGGTAGGTGGAACCAT
LOC_Os10g09670
OsAffx.20684.1.S1_at--939--1051Chr10:4998572..4998596 (25 bp)
AGGTGGAACCATGGCGTGTCCTTCA
LOC_Os10g09670
OsAffx.20684.1.S1_at--229--7451Chr10:4998587..4998611 (25 bp)
GTGTCCTTCATGAGAACCGTGGGTG
LOC_Os10g09670
OsAffx.20684.1.S1_at--490--2591Chr10:4998692..4998716 (25 bp)
AACGTTGCGGGCATGGACATCGCCT
LOC_Os10g09670
OsAffx.20684.1.S1_at--576--5671Chr10:4998707..4998731 (25 bp)
GACATCGCCTGTAGGGTTGTCACGG
LOC_Os10g09670
OsAffx.20684.1.S1_at--237--911Chr10:4998851..4998875 (25 bp)
AGGACGGTAAAGAGCGCCTCACGCG
LOC_Os10g09670
Target Sequence 
GCAAGCAGCCGGATTGGCTACCAGAAGAGGGGCGGCAAGGGCCACCAGATGCCGTCGATGTGCACCAATGGGATCAAGCA
TCACTCGCTAGCTCCTTCAGCACCACGATGCTGCCATTACCCGCCACAAATGAATGCTACTGGGAAATTGGTGTTCGAGA
CCCCCAAAATGATGGGAGCAATGATGTCGGCAGAGAGAACATCTTGGAGATGGGCGGCATCATCGAATGGAGGCGCGGAT
GGGCGGTGGATATTACCGGTAGGTGGAACCATGGCGTGTCCTTCATGAGAACCGTGGGTGAGGCACGTAGAAGCAAAAAG
GGCGGCAAGGTCCAGCGGCATGGGTGCCAGGGCAGGGATGCCATGGGCACCATGGGAAGGAACGTTGCGGGCATGGACAT
CGCCTGTAGGGTTGTCACGGCTGCCGCGGATGCGGGGGAGGGGGTGAGAGGGTCGGTGACGACCGGTGTAGGGGCGAGGG
CAGTCGTGGCCGTGCCGAAGCTTTCAGCCGGAGGGGAGGGTGCTAAGAGAAGGTCACTGAGGACGGTAAAGAGCGCCTCA
CGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis