Browse Element(s) Details


OsAffx.20691.1.S1_x_at

Description gb:NM_195118.1
DB_XREF= gi:37531595
TID=OsAffx.20691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0011A24.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g076901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g201701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g458601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g131101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g117101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07650NANA4+4051010..4057750retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07660NANA4+4059944..4066115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07670OsAffx.21249.1.S1_at1/114+4069136..4074003retrotransposon protein, putative, unclassified
LOC_Os04g07680OsAffx.25911.1.S1_at11/114+4075685..4078001hypothetical protein
LOC_Os04g07680OsAffx.29146.1.S1_x_at1/114+4075685..4078001hypothetical protein
LOC_Os04g07690Os.47999.3.S1_x_at5/114+4079121..4079633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07690OsAffx.20691.1.S1_x_at1/114+4079121..4079633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07700Os.45173.5.S1_x_at4/114+4081955..4082755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07710NANA4+4083021..4087442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07720Os.29992.2.S1_x_at2/114+4092088..4095190hypothetical protein
LOC_Os04g07730OsAffx.31869.1.S1_at6/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.5.S1_x_at4/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.3.S1_at3/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.3.S1_x_at3/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.4.S1_at1/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.4.S1_x_at1/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.2.S1_at1/114+4100611..4101726retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20691.1.S1_x_at--1016--951Chr10:4915892..4915916 (25 bp)
AGGACGCACACGGAGGGCACCAATG
NONE
OsAffx.20691.1.S1_x_at--74--3313Chr10:7084032..7084053 (22 bp)
CACACGGAGGGCACCAATGGGTAGC
NONE
OsAffx.20691.1.S1_x_at--62--3373Chr10:7084040..7084063 (24 bp)
CACCAATGGGTAGCGGACGGCACGA
NONE
OsAffx.20691.1.S1_x_at--264--5752Chr06:11419031..11419051 (21 bp)
GACGGCACGACGAACTCACCGATGA
NONE
OsAffx.20691.1.S1_x_at--406--4234Chr08:7029637..7029659 (23 bp)
CCGATGACCACAACGGCGGCGGAGA
NONE
OsAffx.20691.1.S1_x_at--509--19318Chr10:9798196..9798349 (25 bp)
ACGGCGGCGGAGAAGCAACGGACGG
LOC_Os10g20170
OsAffx.20691.1.S1_x_at--1097--1852Chr10:4915765..4915789 (25 bp)
ACGACGGCGACGATGCTCCAGTGGT
NONE
OsAffx.20691.1.S1_x_at--427--611Chr10:4915753..4915777 (25 bp)
ATGCTCCAGTGGTCTCCGACGGCGG
NONE
OsAffx.20691.1.S1_x_at--1109--3931Chr10:4915625..4915649 (25 bp)
CGGCGGCAGCGAAGCTAGGGCGCAT
NONE
OsAffx.20691.1.S1_x_at--538--3491Chr10:4915603..4915627 (25 bp)
CATGGCGCTAGGACGACTCCGGCGA
NONE
OsAffx.20691.1.S1_x_at--894--4115Chr01:26142475..26142499 (25 bp)
CGCTAGGACGACTCCGGCGACGAGA
NONE
Target Sequence 
AGGACGCACACGGAGGGCACCAATGGGTAGCGGACGGCACGACGAACTCACCGATGACCACAACGGCGGCGGAGAAGCAA
CGGACGGCGCCGGCGACGAGGAGGAAACGGCGGGGCTCTTCGGGTTGACGACGGCGACGATGCTCCAGTGGTCTCCGACG
GCGGCGAAGGGGCGGACGAGGACGGCGACGCGACGGCGAACACGACGGCGGCCTTCCCGAGCGACGGCGACGGCTGGAAC
GACGGCGGCGCACGGCTGGAGCGGCGGCGGCGGCAGCGAAGCTAGGGCGCATGGCGCTAGGACGACTCCGGCGACGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20691.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis