Browse Element(s) Details


OsAffx.25911.1.S1_at

Description tigr:9632.m00681
TID=OsAffx.25911.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0768011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07650NANA4+4051010..4057750retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07660NANA4+4059944..4066115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07670OsAffx.21249.1.S1_at1/114+4069136..4074003retrotransposon protein, putative, unclassified
LOC_Os04g07680OsAffx.25911.1.S1_at11/114+4075685..4078001hypothetical protein
LOC_Os04g07680OsAffx.29146.1.S1_x_at1/114+4075685..4078001hypothetical protein
LOC_Os04g07690Os.47999.3.S1_x_at5/114+4079121..4079633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07690OsAffx.20691.1.S1_x_at1/114+4079121..4079633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07700Os.45173.5.S1_x_at4/114+4081955..4082755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07710NANA4+4083021..4087442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07720Os.29992.2.S1_x_at2/114+4092088..4095190hypothetical protein
LOC_Os04g07730OsAffx.31869.1.S1_at6/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.5.S1_x_at4/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.3.S1_at3/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.3.S1_x_at3/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.4.S1_at1/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.4.S1_x_at1/114+4100611..4101726retrotransposon protein, putative, unclassified
LOC_Os04g07730OsAffx.31869.2.S1_at1/114+4100611..4101726retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25911.1.S1_at--226--2951Chr04:4077307..4077331 (25 bp)
AAGGCCGCGGCCAGTCTCTACGGCA
LOC_Os04g07680
OsAffx.25911.1.S1_at--849--7171Chr04:4077399..4077423 (25 bp)
GTCTGCTTCAGAGTACTCTCTAGCG
LOC_Os04g07680
OsAffx.25911.1.S1_at--934--10511Chr04:4077405..4077429 (25 bp)
TTCAGAGTACTCTCTAGCGGTGCCC
LOC_Os04g07680
OsAffx.25911.1.S1_at--1034--4731Chr04:4077442..4077466 (25 bp)
GCTGATTTCGATACTCGGGCAGACC
LOC_Os04g07680
OsAffx.25911.1.S1_at--583--3911Chr04:4077688..4077712 (25 bp)
CGGCCCATTGTTCGACGGAGAGAAC
LOC_Os04g07680
OsAffx.25911.1.S1_at--861--8051Chr04:4077704..4077728 (25 bp)
GGAGAGAACCATGCGTGCTCATCTT
LOC_Os04g07680
OsAffx.25911.1.S1_at--750--7311Chr04:4077718..4077742 (25 bp)
GTGCTCATCTTGACGGCTTCAAGAG
LOC_Os04g07680
OsAffx.25911.1.S1_at--866--2911Chr04:4077822..4077846 (25 bp)
AAGGCAAAAAATGAGCGGCTCCAAG
LOC_Os04g07680
OsAffx.25911.1.S1_at--33--5371Chr04:4077872..4077896 (25 bp)
GAAGACCAAGATTGAGCGTCTCAAG
LOC_Os04g07680
OsAffx.25911.1.S1_at--1153--5491Chr04:4077912..4077936 (25 bp)
GAACAAGATTTTTCTGCCGCCTTGA
LOC_Os04g07680
OsAffx.25911.1.S1_at--853--10311Chr04:4077922..4077946 (25 bp)
TTTCTGCCGCCTTGACTGAGTACTA
LOC_Os04g07680
Target Sequence 
AAGGCCGCGGCCAGTCTCTACGGCAGCCCTGTGCGCAAACTGGTGGCTTCGCCGCTCGCCATCGAGAAGGGGAAGAAAAA
GGCCGCCGAAACGTCTGCTTCAGAGTACTCTCTAGCGGTGCCCCACTTTGCCCCTGCTGATTTCGATACTCGGGCAGACC
TTGTCCCCTTCGTCGAGGGGGTAAGTAATCTCGTCTCTCTGGTTGGCAGCCCGAGCCTGTTCACCGAGCTGAACGGGTTC
GACGAAGGCTATTCTACCATCAAGAGCTTGGCAGTCCGGATTCTCGCGGCCCATTGTTCGACGGAGAGAACCATGCGTGC
TCATCTTGACGGCTTCAAGAGCCGTCTTCGAGCCAAGGACGATGAACTGGGCCGCAAGAGCCTGGAAATGGAAAGCCTCG
CCAACACCCTCAAAGAGACGAAGGCAAAAAATGAGCGGCTCCAAGCTGAGCTGGAGAAGGGGAGCGAGGCGAAGACCAAG
ATTGAGCGTCTCAAGGCCGAGCTCAAAAAAGAACAAGATTTTTCTGCCGCCTTGACTGAGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis