Browse Element(s) Details


OsAffx.20978.1.S1_at

Description gb:XM_354121.1
DB_XREF= gi:35189675
GEN=OJ1664_D08.5
TID=OsAffx.20978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g111005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11060Os.35753.1.S1_a_at11/117+6106359..6113781expressed protein
LOC_Os07g11070Os.44419.1.S1_at11/117+6116162..6119949bZIP protein, putative, expressed
LOC_Os07g11080OsAffx.8864.1.S1_at8/117+6123094..6126197retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11090Os.46273.1.S1_at3/117+6126567..6127886retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11100OsAffx.16208.1.S1_at11/117+6131217..6131664hypothetical protein
LOC_Os07g11100OsAffx.20978.1.S1_at5/117+6131217..6131664hypothetical protein
LOC_Os07g11110Os.8521.2.S1_x_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_at11/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.8521.1.S1_a_at10/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11110Os.51424.1.S1_at1/117+6132315..6135056mRNA-binding protein precursor, putative, expressed
LOC_Os07g11120Os.9994.1.S1_at11/117+6135357..6139332hydrolase, NUDIX family protein, expressed
LOC_Os07g11130OsAffx.1477.1.S1_at11/117+6144464..6144910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11150Os.44418.2.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11150Os.44418.1.S1_at11/117+6145270..6150849expressed protein
LOC_Os07g11160OsAffx.20490.1.S1_at6/117+6153663..6157210transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20978.1.S1_at--475--6251Chr07:6131385..6131406 (22 bp)
GATGGTAGGTGCGAATGACAACAAT
LOC_Os07g11100
OsAffx.20978.1.S1_at--1119--7291Chr07:6131377..6131401 (25 bp)
GTGCGAATGACAACAATGCATCTTT
LOC_Os07g11100
OsAffx.20978.1.S1_at--197--3191Chr07:6131364..6131388 (25 bp)
CAATGCATCTTTCAGCAAGCTCATG
LOC_Os07g11100
OsAffx.20978.1.S1_at--922--431Chr07:6131358..6131382 (25 bp)
ATCTTTCAGCAAGCTCATGGCAGAA
LOC_Os07g11100
OsAffx.20978.1.S1_at--529--9651Chr07:6131353..6131377 (25 bp)
TCAGCAAGCTCATGGCAGAAAAGAC
LOC_Os07g11100
OsAffx.20978.1.S1_at--29--5532Chr08:2774937..2775087 (24 bp)
GAAAAGACAAGCAACCGCATAAGGG
NONE
OsAffx.20978.1.S1_at--498--7671Chr07:6131191..6131215 (25 bp)
GGGATTTTCAATGGCGACGACAGAA
NONE
OsAffx.20978.1.S1_at--70--8391Chr07:6131179..6131203 (25 bp)
GGCGACGACAGAAAACAGACTTAGC
NONE
OsAffx.20978.1.S1_at--258--2491Chr07:6131166..6131190 (25 bp)
AACAGACTTAGCAGTTGGCAGCAAT
NONE
OsAffx.20978.1.S1_at--887--10011Chr07:6131158..6131182 (25 bp)
TAGCAGTTGGCAGCAATTGGTGGTT
NONE
OsAffx.20978.1.S1_at--701--31Chr07:6131143..6131167 (25 bp)
ATTGGTGGTTGAGTTCTATAGAGGC
NONE
Target Sequence 
GATGGTAGGTGCGAATGACAACAATGCATCTTTCAGCAAGCTCATGGCAGAAAAGACAAGCAACCGCATAAGGGGATTTT
CAATGGCGACGACAGAAAACAGACTTAGCAGTTGGCAGCAATTGGTGGTTGAGTTCTATAGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis