Browse Element(s) Details


OsAffx.21107.1.S1_at

Description gb:NM_193957.1
DB_XREF= gi:34914997
GEN=P0458A05.3
TID=OsAffx.21107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0458A05.3 (P0458A05.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2518911/11Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25160OsAffx.23386.1.S1_at11/111+14192960..14193587Jacalin-like lectin domain containing protein
LOC_Os01g25170OsAffx.23387.1.S1_at11/111+14203265..14203860hypothetical protein
LOC_Os01g25189OsAffx.21107.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.26848.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189OsAffx.13227.1.S1_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.55138.1.S1_x_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25210NANA1+14227658..14228593retrotransposon, putative, centromere-specific
LOC_Os01g25220OsAffx.11199.1.S1_x_at11/111+14230490..14230776hypothetical protein
LOC_Os01g25230OsAffx.2080.1.S1_at11/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.2.A1_at6/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.5.S1_x_at3/111+14232696..14234440hypothetical protein
LOC_Os01g25240OsAffx.8871.1.S1_at10/111+14235410..14239865expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0016126biological_processsterol biosynthesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0009918molecular_functionsterol delta7 reductase activity
GO:0050613molecular_functiondelta14-sterol reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21107.1.S1_at--547--4232Chr06:2540018..2540038 (21 bp)
CCGACTTCTCCCTATGTGATGGATG
NONE
OsAffx.21107.1.S1_at--647--7391Chr01:14212315..14212339 (25 bp)
GTGATGGATGTGTATTCCTCGGCGC
LOC_Os01g25189
OsAffx.21107.1.S1_at--839--831Chr01:14212312..14212336 (25 bp)
ATGGATGTGTATTCCTCGGCGCGCG
LOC_Os01g25189
OsAffx.21107.1.S1_at--851--4371Chr01:14212276..14212300 (25 bp)
CCAACCGGGACGAGGTGCTAGTGCT
LOC_Os01g25189
OsAffx.21107.1.S1_at--192--9091Chr01:14212261..14212285 (25 bp)
TGCTAGTGCTGCGAGTGCGCCGCCA
LOC_Os01g25189
OsAffx.21107.1.S1_at--732--6251Chr01:14212184..14212208 (25 bp)
GATGGGACGGAGCTTCAGCGACGCG
LOC_Os01g25189
OsAffx.21107.1.S1_at--666--4671Chr01:14212017..14212041 (25 bp)
GCGGTCTCTCATCCTTGTGGAGGAT
LOC_Os01g25189
OsAffx.21107.1.S1_at--39--9251Chr01:14212006..14212030 (25 bp)
TCCTTGTGGAGGATCTTGACCAGTT
LOC_Os01g25189
OsAffx.21107.1.S1_at--1028--8011Chr01:14211999..14212023 (25 bp)
GGAGGATCTTGACCAGTTCCTGCAG
LOC_Os01g25189
OsAffx.21107.1.S1_at--950--3831Chr01:14211943..14212004 (25 bp)
CTGCAGGGCGGATCTCGATCTCGGT
LOC_Os01g25189
OsAffx.21107.1.S1_at--604--9391Chr01:14211929..14211953 (25 bp)
TCGATCTCGGTTCCTGCAGGGCGAC
LOC_Os01g25189
Target Sequence 
CCGACTTCTCCCTATGTGATGGATGTGTATTCCTCGGCGCGCGCCTCGCATGGACCAACCGGGACGAGGTGCTAGTGCTG
CGAGTGCGCCGCCATGACCGGACGCACGTGCTGCAGCCCTACCTGCAGCACGTCGAGTTCGTCGCCGATGGGACGGAGCT
TCAGCGACGCGAGCTGCACCTGTTCGCCAACACCGGCGTGGATGGGAGCACCAGGACGCCGAGGTGGGCGTCGGCGCGGT
TCTTGGGCCACGACATCGATCTCTCCCGCGCCGGCATCGACGACCTCCGCGCGCTGCTCCTGCACACCACCCCGCGGTCT
CTCATCCTTGTGGAGGATCTTGACCAGTTCCTGCAGGGCGGATCTCGATCTCGGTTCCTGCAGGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis