Browse Element(s) Details


OsAffx.21119.2.S1_at

Description tigr:9629.m02731
TID=OsAffx.21119.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2852011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28460Os.24942.4.A1_x_at6/111+16272370..16273964hypothetical protein
LOC_Os01g28460Os.24942.4.A1_at3/111+16272370..16273964hypothetical protein
LOC_Os01g28474Os.31392.1.S1_at11/111+16275642..16279873Transferase family protein, expressed
LOC_Os01g28490OsAffx.8880.1.S1_at11/111+16282644..16283943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28500Os.13965.1.S1_at11/111+16285609..16286363Pathogenesis-related protein PRMS precursor, putative, expressed
LOC_Os01g28510Os.32238.1.S1_at11/111+16292971..16294510expressed protein
LOC_Os01g28520OsAffx.21119.2.S1_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28520OsAffx.21119.1.S1_s_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28530Os.45173.1.S1_x_at3/111+16297336..16299567retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative
LOC_Os01g28580Os.26963.1.A1_at11/111+16319625..16323710expressed protein
LOC_Os01g28580OsAffx.19810.4.S1_s_at1/111+16319625..16323710expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21119.2.S1_at--99--7731Chr01:16296322..16296346 (25 bp)
GGTGGAGGCCACGTTCAGGAGCGCT
LOC_Os01g28520
OsAffx.21119.2.S1_at--1126--10511Chr01:16296335..16296359 (25 bp)
TTCAGGAGCGCTGGATGGGCTTACC
LOC_Os01g28520
OsAffx.21119.2.S1_at--59--971Chr01:16296338..16296362 (25 bp)
AGGAGCGCTGGATGGGCTTACCCTT
LOC_Os01g28520
OsAffx.21119.2.S1_at--849--8071Chr01:16296339..16296363 (25 bp)
GGAGCGCTGGATGGGCTTACCCTTT
LOC_Os01g28520
OsAffx.21119.2.S1_at--757--4711Chr01:16296344..16296368 (25 bp)
GCTGGATGGGCTTACCCTTTCCTGA
LOC_Os01g28520
OsAffx.21119.2.S1_at--780--8551Chr01:16296346..16296370 (25 bp)
TGGATGGGCTTACCCTTTCCTGATG
LOC_Os01g28520
OsAffx.21119.2.S1_at--856--791Chr01:16296349..16296373 (25 bp)
ATGGGCTTACCCTTTCCTGATGCCA
LOC_Os01g28520
OsAffx.21119.2.S1_at--976--8291Chr01:16296352..16296376 (25 bp)
GGCTTACCCTTTCCTGATGCCATGG
LOC_Os01g28520
OsAffx.21119.2.S1_at--1009--3651Chr01:16296354..16296378 (25 bp)
CTTACCCTTTCCTGATGCCATGGCG
LOC_Os01g28520
OsAffx.21119.2.S1_at--960--10291Chr01:16296361..16296385 (25 bp)
TTTCCTGATGCCATGGCGCCACTCA
LOC_Os01g28520
OsAffx.21119.2.S1_at--191--10671Chr01:16296362..16296386 (25 bp)
TTCCTGATGCCATGGCGCCACTCAT
LOC_Os01g28520
Target Sequence 
GGTGGAGGCCACGTTCAGGAGCGCTGGATGGGCTTACCCTTTCCTGATGCCATGGCGCCACTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21119.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis