Browse Element(s) Details


OsAffx.21171.5.S1_at

Description gb:NM_184744.1
DB_XREF= gi:34896577
GEN=OSJNBa0026A15.8
TID=OsAffx.21171.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol precursor (OSJNBa0026A15.8), mRNA.
PROD=putative gag-pol precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3686011/11retrotransposon protein, putative, unclassified
LOC_Os01g324005/11retrotransposon protein, putative, unclassified
LOC_Os07g426803/11transposon protein, putative, unclassified
LOC_Os05g377603/11retrotransposon protein, putative, unclassified
LOC_Os05g396203/11retrotransposon protein, putative, unclassified
LOC_Os04g148602/11retrotransposon protein, putative, unclassified
LOC_Os12g203001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36810OsAffx.22712.1.S1_at11/113+20389518..20390136hypothetical protein
LOC_Os03g36830Os.53883.1.S1_at11/113+20398804..20401902expressed protein
LOC_Os03g36860OsAffx.21171.5.S1_x_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36860OsAffx.21171.5.S1_at11/113+20407701..20410041retrotransposon protein, putative, unclassified
LOC_Os03g36870NANA3+20412699..20413484retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.4.S1_x_at11/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880Os.45173.1.S1_x_at3/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36880OsAffx.21171.3.S1_x_at1/113+20417348..20420242retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.2.S1_x_at11/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22711.4.A1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.20380.2.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.8420.1.S1_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36890OsAffx.22927.1.S1_x_at1/113+20421176..20424576retrotransposon protein, putative, unclassified
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21171.5.S1_at--39--10231Chr03:20409553..20409577 (25 bp)
TTTGACGTGCTCAAAGCCCCGGGGA
LOC_Os03g36860
OsAffx.21171.5.S1_at--858--9211Chr03:20409584..20409608 (25 bp)
TCCAGCCGTCGCTCCTAATCATTGG
LOC_Os03g36860
OsAffx.21171.5.S1_at--714--7231Chr03:20409591..20409615 (25 bp)
GTCGCTCCTAATCATTGGCGTTACT
LOC_Os03g36860
OsAffx.21171.5.S1_at--918--4511Chr03:20409594..20409618 (25 bp)
GCTCCTAATCATTGGCGTTACTCCG
LOC_Os03g36860
OsAffx.21171.5.S1_at--340--3812Chr03:20409595..20409619 (25 bp)
CTCCTAATCATTGGCGTTACTCCGG
LOC_Os03g36860
OsAffx.21171.5.S1_at--745--11Chr03:20409604..20409628 (25 bp)
ATTGGCGTTACTCCGGGGCACACAT
LOC_Os03g36860
OsAffx.21171.5.S1_at--1140--4914Chr03:20409633..20409657 (25 bp)
GCTTGGCCACGTAGAGCTTCCGGTG
LOC_Os03g36860
OsAffx.21171.5.S1_at--118--10874Chr03:20409635..20409659 (25 bp)
TTGGCCACGTAGAGCTTCCGGTGAC
LOC_Os03g36860
OsAffx.21171.5.S1_at--498--4415Chr07:25551825..25551844 (20 bp)
GCCACGTAGAGCTTCCGGTGACCTT
LOC_Os07g42680
OsAffx.21171.5.S1_at--1124--6914Chr07:25551825..25551849 (25 bp)
GTAGAGCTTCCGGTGACCTTCGGTG
LOC_Os07g42680
OsAffx.21171.5.S1_at--430--1334Chr07:25551827..25551851 (25 bp)
AGAGCTTCCGGTGACCTTCGGTGAC
LOC_Os07g42680
Target Sequence 
TTTGACGTGCTCAAAGCCCCGGGGATGAAGCTCCAGCCGTCGCTCCTAATCATTGGCGTTACTCCGGGGCACACATGGCC
GCTTGGCCACGTAGAGCTTCCGGTGACCTTCGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21171.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis