Browse Element(s) Details


OsAffx.21227.1.S1_x_at

Description gb:NM_193466.1
DB_XREF= gi:34914015
GEN=OJ1014_G12.23
TID=OsAffx.21227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1014_G12.23 (OJ1014_G12.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3760010/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37580OsAffx.11362.2.S1_x_at11/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.11362.1.S1_at10/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.16381.1.S1_x_at1/111+21337410..21349541hypothetical protein
LOC_Os01g37590Os.45923.1.S1_at11/111+21365653..21367927Major Facilitator Superfamily protein, expressed
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein
LOC_Os01g37670Os.31606.1.S1_at11/111+21395354..21397056F-box domain containing protein, expressed
LOC_Os01g37690Os.19755.2.S1_a_at11/111+21398344..21403577Vacuolar cation/proton exchanger 1a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21227.1.S1_x_at--1063--3931Chr01:21373217..21373241 (25 bp)
CGGCGGCGATGTACACCGTGTCGTT
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--459--1831NONE
ACGCGCGCGACGTGGACGAAGAAAA
NONE
OsAffx.21227.1.S1_x_at--713--1971Chr01:21369065..21369089 (25 bp)
ACTGAGGTGCCTCTCGGAATTGGAA
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--81--1931Chr01:21369036..21369060 (25 bp)
ACGGATTTGATGTTAGGGCCCTGAA
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--706--5891Chr01:21369010..21369034 (25 bp)
GAGCGGCTTGAAAACCTCGTGAGCA
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--54--6611Chr01:21368946..21368970 (25 bp)
GATTGGATCAGTTCATGCTTGAGAG
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--459--7731Chr01:21368918..21368942 (25 bp)
GGTGGACAATGCCTCTGTAGAGCAA
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--260--1451Chr01:21368889..21368913 (25 bp)
AGAAGCTGCTCGACATAATGATCAA
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--1--5391Chr01:21368831..21368855 (25 bp)
GAAGAAGGCATCACTCGTGGAGAAG
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--118--3171Chr01:21368786..21368810 (25 bp)
AATTGCAAAGCTCCAAGGCGACATG
LOC_Os01g37600
OsAffx.21227.1.S1_x_at--654--1151Chr01:21368748..21368772 (25 bp)
AGTCATTCCTTTCTGCCGAGTATGA
LOC_Os01g37600
Target Sequence 
CGGCGGCGATGTACACCGTGTCGTTCCCGTCGTGCCGGGAAGAGGCGAAGCTCCCGGCCTCGCTCGTCCGGCGGCGGCGG
GCGTTCGTGCGCGGGCGCTGGATGGACGCGCGCGACGTGGACGAAGAAAACGTCTTTGAGGAGAAACTGAGGTGCCTCTC
GGAATTGGAAGAGGACGGATTTGATGTTAGGGCCCTGAAGGAGCGGCTTGAAAACCTCGTGAGCATAAAGAATCACCAGA
CAGAACTCAAGAAGAAAAGAGCAAGATTGGATCAGTTCATGCTTGAGAGAGAGGTGGACAATGCCTCTGTAGAGCAAAGC
CAGAAGCTGCTCGACATAATGATCAAGGAGCTTGAGCTGAAACTTTTAGAGTACCGAGAGAAGAAGGCATCACTCGTGGA
GAAGAAAGCAGCGAACTGTTCGGAAATTGCAAAGCTCCAAGGCGACATGGATCAAATTGAGGAGTCATTCCTTTCTGCCG
AGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21227.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis