Browse Element(s) Details


OsAffx.21261.1.S1_x_at

Description gb:NM_193288.1
DB_XREF= gi:34913659
GEN=OSJNBa0047D12.16
TID=OsAffx.21261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0047D12.16 (OSJNBa0047D12.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3593010/11hypothetical protein
LOC_Os05g309901/11hydroxyproline-rich glycoprotein family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35870OsAffx.2159.1.S1_at11/111+20185813..20186286hypothetical protein
LOC_Os01g35880OsAffx.23523.2.S1_at11/111+20191554..20192825hypothetical protein
LOC_Os01g35890OsAffx.8275.1.S1_at1/111+20195994..20197161retrotransposon protein, putative, unclassified
LOC_Os01g35910NANA1+20201667..20201900hypothetical protein
LOC_Os01g35920NANA1+20202956..20206158hypothetical protein
LOC_Os01g35930Os.38208.1.S1_at11/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_x_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.2.S1_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_at9/111+20211101..20213199hypothetical protein
LOC_Os01g35950OsAffx.23526.1.S1_at9/111+20220487..20221594hypothetical protein
LOC_Os01g35960OsAffx.11342.1.S1_at11/111+20223152..20226101hypothetical protein
LOC_Os01g35970Os.52242.1.S1_at3/111+20230034..20233244transposon protein, putative, Mariner sub-class
LOC_Os01g35970OsAffx.2708.1.S1_x_at1/111+20230034..20233244transposon protein, putative, Mariner sub-class
LOC_Os01g35980Os.40988.1.S1_at11/111+20233891..20236248hypothetical protein
LOC_Os01g35990Os.34335.1.S1_x_at6/111+20238088..20241107expressed protein
LOC_Os01g35990Os.34335.1.S1_at4/111+20238088..20241107expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21261.1.S1_x_at--1071--2232Chr01:20212036..20212060 (25 bp)
ACAATTTGCATATTCCACTTTTACA
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--374--3291Chr01:20212051..20212075 (25 bp)
CACTTTTACAAGACAGATCGCCTGG
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--150--6391Chr01:20212066..20212090 (25 bp)
GATCGCCTGGAAGCAACGGCAGATG
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--752--1931Chr01:20212081..20212105 (25 bp)
ACGGCAGATGTCTTGTGAAGGCAAT
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--891--251Chr01:20212104..20212128 (25 bp)
ATATGCATCGGCTACAACCTGTCAT
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--300--8791Chr01:20212134..20212533 (25 bp)
TGTTATCGCCAAATGCATTGTGCAC
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--1154--1531Chr01:20212559..20212629 (25 bp)
AGCATCTAGTGCAGGCAAAACTCAG
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--80--9651Chr01:20212626..20212650 (25 bp)
TCAGATAATCACGTTGCCTCTGCTG
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--1025--9111Chr01:20212646..20212670 (25 bp)
TGCTGCAAGTCACGTTGCCTCTGCT
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--885--7152Chr01:20212675..20212699 (25 bp)
GTCTGCAACCAAGACTTGGCTTGCT
LOC_Os01g35930
OsAffx.21261.1.S1_x_at--1006--9111NONE
TGCTGCAAGAAAACACCACACGCTG
NONE
Target Sequence 
ACAATTTGCATATTCCACTTTTACAAGACAGATCGCCTGGAAGCAACGGCAGATGTCTTGTGAAGGCAATATGCATCGGC
TACAACCTGTCATCCTCCTGTTATCGCCAAATGCATTGTGCACAGGCGGCGCGCCAATGGCGCGCCCCAGCATCTAGTGC
AGGCAAAACTCAGATAATCACGTTGCCTCTGCTGCAAGTCACGTTGCCTCTGCTGCAAGTCTGCAACCAAGACTTGGCTT
GCTGCAAGAAAACACCACACGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21261.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis