Browse Element(s) Details


OsAffx.21261.2.S1_at

Description tigr:9629.m03385
TID=OsAffx.21261.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3593010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35870OsAffx.2159.1.S1_at11/111+20185813..20186286hypothetical protein
LOC_Os01g35880OsAffx.23523.2.S1_at11/111+20191554..20192825hypothetical protein
LOC_Os01g35890OsAffx.8275.1.S1_at1/111+20195994..20197161retrotransposon protein, putative, unclassified
LOC_Os01g35910NANA1+20201667..20201900hypothetical protein
LOC_Os01g35920NANA1+20202956..20206158hypothetical protein
LOC_Os01g35930Os.38208.1.S1_at11/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_x_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.2.S1_at10/111+20211101..20213199hypothetical protein
LOC_Os01g35930OsAffx.21261.1.S1_at9/111+20211101..20213199hypothetical protein
LOC_Os01g35950OsAffx.23526.1.S1_at9/111+20220487..20221594hypothetical protein
LOC_Os01g35960OsAffx.11342.1.S1_at11/111+20223152..20226101hypothetical protein
LOC_Os01g35970Os.52242.1.S1_at3/111+20230034..20233244transposon protein, putative, Mariner sub-class
LOC_Os01g35970OsAffx.2708.1.S1_x_at1/111+20230034..20233244transposon protein, putative, Mariner sub-class
LOC_Os01g35980Os.40988.1.S1_at11/111+20233891..20236248hypothetical protein
LOC_Os01g35990Os.34335.1.S1_x_at6/111+20238088..20241107expressed protein
LOC_Os01g35990Os.34335.1.S1_at4/111+20238088..20241107expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21261.2.S1_at--1152--1531NONE
AGCATCTAGTGCAGGTACCACAAAT
NONE
OsAffx.21261.2.S1_at--690--1391Chr01:20212866..20212890 (25 bp)
AGACGTATGGCCTCCAATGCCGAAC
LOC_Os01g35930
OsAffx.21261.2.S1_at--177--5472Chr01:20212887..20212911 (25 bp)
GAACTGCTTGAACCAACCCAATGAG
LOC_Os01g35930
OsAffx.21261.2.S1_at--548--691Chr01:20212907..20212931 (25 bp)
ATGAGCTCCCTTTCATAAGCAGCAA
LOC_Os01g35930
OsAffx.21261.2.S1_at--19--4671Chr01:20212942..20212966 (25 bp)
GCGTGGTGCTATCGGCCGACTAAAA
LOC_Os01g35930
OsAffx.21261.2.S1_at--122--8611Chr01:20212975..20212999 (25 bp)
TGGTCCAGCGCCTTGATGCAGGATG
LOC_Os01g35930
OsAffx.21261.2.S1_at--1158--7991Chr01:20212995..20213019 (25 bp)
GGATGGCACCAAACCATGCACTCGA
LOC_Os01g35930
OsAffx.21261.2.S1_at--567--9372Chr01:20213016..20213040 (25 bp)
TCGACGCGTCACACTCGATGATGAA
LOC_Os01g35930
OsAffx.21261.2.S1_at--793--2872Chr01:20213039..20213063 (25 bp)
AAGGGCTGCGCGAAATCTGGAAGTT
LOC_Os01g35930
OsAffx.21261.2.S1_at--831--3232Chr01:20213129..20213153 (25 bp)
CAAGCGAACGCTGCCTTCCTGAGGA
LOC_Os01g35930
OsAffx.21261.2.S1_at--7--10671Chr01:20213144..20213168 (25 bp)
TTCCTGAGGAGGCATGTTGTCACGC
LOC_Os01g35930
Target Sequence 
AGCATCTAGTGCAGGTACCACAAATGGGCAACCAGACGTATGGCCTCCAATGCCGAACTGCTTGAACCAACCCAATGAGC
TCCCTTTCATAAGCAGCAAGGCGAGGATGGCGTGGTGCTATCGGCCGACTAAAAAACGCCACTGGTCCAGCGCCTTGATG
CAGGATGGCACCAAACCATGCACTCGACGCGTCACACTCGATGATGAAGGGCTGCGCGAAATCTGGAAGTTGCAGTGTTG
GGGCAGACGTGATAGTGTGTTGGAGTGCCCGGAATGCGCGCTCCGCATCATCGGACCAAGCGAACGCTGCCTTCCTGAGG
AGGCATGTTGTCACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21261.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis