Browse Element(s) Details


OsAffx.21289.2.S1_x_at

Description tigr:9629.m03246
TID=OsAffx.21289.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3460011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34540NANA1+19380746..19381012hypothetical protein
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein
LOC_Os01g34560Os.33316.1.S1_at11/111+19386083..19388014very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os01g34570NANA1+19389270..19390814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21289.2.S1_x_at--226--10191Chr01:19405372..19405396 (25 bp)
TATACCTCAAGGCATCGCTATCGGC
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--1149--6131Chr01:19405225..19405249 (25 bp)
GAGGTGGTGTCTCCAACGGCGGATT
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--738--19312Chr12:9364654..9364674 (21 bp)
ACGGCGGATTTGGACTTGGGAGGAG
NONE
OsAffx.21289.2.S1_x_at--20--8831Chr01:19405126..19405150 (25 bp)
TGATTCGACCTCTACTGCGCCTCTG
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--1102--10771Chr01:19405069..19405093 (25 bp)
TTGTCATCTGCAGCTTAAGTCCACC
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--828--471Chr01:19405064..19405088 (25 bp)
ATCTGCAGCTTAAGTCCACCAGAGC
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--334--9031Chr01:19405061..19405085 (25 bp)
TGCAGCTTAAGTCCACCAGAGCCAC
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--225--6591Chr01:19405027..19405051 (25 bp)
GATTGCCCACAGTAGCCACCGCTGG
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--189--1371Chr01:19404988..19405012 (25 bp)
AGAGCAATGCCAACCGCATCTGGGA
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--81--591Chr01:19404982..19405006 (25 bp)
ATGCCAACCGCATCTGGGAAAGCTT
LOC_Os01g34600
OsAffx.21289.2.S1_x_at--871--2611Chr01:19404977..19405001 (25 bp)
AACCGCATCTGGGAAAGCTTAAGGG
LOC_Os01g34600
Target Sequence 
TATACCTCAAGGCATCGCTATCGGCGAAGAAGAGGAGTGGCTTCATCTTCCCACCATGGTCGGGGTGCGGGGGGCTGTTC
AGGGTGCTCACCGGCCTCCCCGCCCCCCCCTCACCGTCCTCCCCGCCTCCTCCCTCTCTGTGCGGTGGAGGTGGTGTCTC
CAACGGCGGATTTGGACTTGGGAGGAGCTTGTCGGCCTCCCCACCTCGTCCCTCTCCACACGCGCGGGTGTCCGCCGCAC
CTCCGCTGATTCGACCTCTACTGCGCCTCTGCTCTTGCTCACTGGCTTCCTCGCCTCAACCTCTTGTCATCTGCAGCTTA
AGTCCACCAGAGCCACCTCCTCGCCGATTGCCCACAGTAGCCACCGCTGGCGACTACCACCACCAGAGCAATGCCAACCG
CATCTGGGAAAGCTTAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21289.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis