Browse Element(s) Details


OsAffx.21290.1.S1_at

Description tigr:9629.m03244
TID=OsAffx.21290.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3458011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34540NANA1+19380746..19381012hypothetical protein
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein
LOC_Os01g34560Os.33316.1.S1_at11/111+19386083..19388014very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os01g34570NANA1+19389270..19390814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21290.1.S1_at--1039--291Chr01:19397787..19397811 (25 bp)
ATACCCGTTGTCGTACGGCTTTGCA
LOC_Os01g34580
OsAffx.21290.1.S1_at--1117--8291Chr01:19397803..19397827 (25 bp)
GGCTTTGCATACTCGTACGTCCTGA
LOC_Os01g34580
OsAffx.21290.1.S1_at--564--8951Chr01:19397825..19397849 (25 bp)
TGACTCCTGTGGTCCACGGCGAGCG
LOC_Os01g34580
OsAffx.21290.1.S1_at--161--7631Chr01:19397870..19397894 (25 bp)
GGGACCTCCACAGGCTCAGGCTAAA
LOC_Os01g34580
OsAffx.21290.1.S1_at--1038--4571Chr01:19397885..19397909 (25 bp)
TCAGGCTAAAGGCAAATGGGCCCAA
LOC_Os01g34580
OsAffx.21290.1.S1_at--988--8391Chr01:19397903..19397927 (25 bp)
GGCCCAAATGGGTGCAAGTCAACAA
LOC_Os01g34580
OsAffx.21290.1.S1_at--303--9011Chr01:19397915..19397939 (25 bp)
TGCAAGTCAACAACCGGGCCGGCCT
LOC_Os01g34580
OsAffx.21290.1.S1_at--27--5531Chr01:19397941..19397965 (25 bp)
GAAAACCGACAAGCCAGCAAACTGT
LOC_Os01g34580
OsAffx.21290.1.S1_at--461--3411Chr01:19397955..19397979 (25 bp)
CAGCAAACTGTGTAGGCGAGGCCGC
LOC_Os01g34580
OsAffx.21290.1.S1_at--753--4411Chr01:19397992..19398016 (25 bp)
GCCAGCCGGCCGGAAACAAATCGTG
LOC_Os01g34580
OsAffx.21290.1.S1_at--811--2191Chr01:19398007..19398031 (25 bp)
ACAAATCGTGGCAGGCGAAAGCGCA
LOC_Os01g34580
Target Sequence 
ATACCCGTTGTCGTACGGCTTTGCATACTCGTACGTCCTGACTCCTGTGGTCCACGGCGAGCGGCTCAGGCCGCTCGAGG
CGCGGGACCTCCACAGGCTCAGGCTAAAGGCAAATGGGCCCAAATGGGTGCAAGTCAACAACCGGGCCGGCCTAGAAAAC
CGACAAGCCAGCAAACTGTGTAGGCGAGGCCGCGAGAGCACCAAGGCCAGCCGGCCGGAAACAAATCGTGGCAGGCGAAA
GCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis