Browse Element(s) Details


OsAffx.21304.1.S1_at

Description tigr:9635.m04373
TID=OsAffx.21304.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4361010/11hypothetical protein
LOC_Os01g681602/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43590OsAffx.16698.2.S1_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.2.S1_s_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.1.S1_at3/117+26093374..26093963hypothetical protein
LOC_Os07g43600OsAffx.21305.1.S1_at11/117+26096444..26098219Ribonuclease T2 family protein
LOC_Os07g43610OsAffx.21304.1.S1_at10/117+26104575..26107569hypothetical protein
LOC_Os07g43610Os.55580.1.S1_at1/117+26104575..26107569hypothetical protein
LOC_Os07g43630Os.45173.1.S1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630OsAffx.20257.1.S1_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630Os.47130.4.A1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43640OsAffx.28965.1.S1_at11/117+26124155..26126609Ribonuclease T2 family protein
LOC_Os07g43650OsAffx.18275.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified
LOC_Os07g43650Os.55450.1.S1_x_at1/117+26131508..26134601retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0004407molecular_functionhistone deacetylase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21304.1.S1_at--893--2911NONE
AAGGAGAACCGACCGATGAGTTATC
NONE
OsAffx.21304.1.S1_at--725--331Chr07:26107078..26107102 (25 bp)
ATACATACAAGCTTTTTGATTGCCA
LOC_Os07g43610
OsAffx.21304.1.S1_at--33--10272Chr07:26106899..26106983 (25 bp)
TTTGATTGCCAATAACCTGCTTTTT
LOC_Os07g43610
OsAffx.21304.1.S1_at--285--352Chr07:26107167..26107187 (21 bp)
ATAACCTGCTTTTTGATTTCATCGG
LOC_Os07g43610
OsAffx.21304.1.S1_at--1077--10353Chr07:26107172..26107196 (25 bp)
TTTTTGATTTCATCGGTGTTTCAGC
LOC_Os07g43610
OsAffx.21304.1.S1_at--1133--9871Chr07:26107235..26107259 (25 bp)
TACATACTAGCCTGCTTGATGTTGC
LOC_Os07g43610
OsAffx.21304.1.S1_at--823--2013Chr07:26107240..26107264 (25 bp)
ACTAGCCTGCTTGATGTTGCATTGG
LOC_Os07g43610
OsAffx.21304.1.S1_at--709--9114Chr12:9337315..9337452 (24 bp)
TGCTGCATTGGCTTACAAGGATTAC
NONE
OsAffx.21304.1.S1_at--311--9711Chr07:26107388..26107412 (25 bp)
TCAACATCGGCGCATTGGCTTACAA
LOC_Os07g43610
OsAffx.21304.1.S1_at--525--2091Chr07:26107391..26107415 (25 bp)
ACATCGGCGCATTGGCTTACAAGGA
LOC_Os07g43610
OsAffx.21304.1.S1_at--1031--3915Chr12:9339845..9339864 (20 bp)
CGGCGCATTGGCTTACAAGGATTAC
NONE
Target Sequence 
AAGGAGAACCGACCGATGAGTTATCTGGATGTTGCATTGGCTTACAAGGATTACATACAAGTTGGATTCAATATCGGCTT
ACAAGGAATACATACAAGCTTTTTGATTGCCAATAACCTGCTTTTTGATTTCATCGGTGTTTCAGCCGATGAGTTATCTA
GATGTTGCATTGGCTTACAAGGATTACATACTAGCCTGCTTGATGTTGCATTGGCTTACAAGGATTACATACTAGCCTGC
CTTTTGATTTCATCGGTGTTTCAGCCGATGAGTTATTTGGATGTGATGAGTTATCTGGATGCTGCATTGGCTTACAAGGA
TTACATACAAGTTGGATTCAACATCGGCGCATTGGCTTACAAGGATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis