Browse Element(s) Details


OsAffx.21308.1.S1_at

Description gb:NM_185005.1
DB_XREF= gi:34897095
GEN=OSJNBa0091J19.21
TID=OsAffx.21308.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0091J19.21), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5691011/11retrotransposon protein, putative, LINE subclass
LOC_Os04g443705/11retrotransposon, putative, centromere-specific
LOC_Os07g432004/11retrotransposon protein, putative, LINE subclass
LOC_Os07g485902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein
LOC_Os03g56910OsAffx.21308.1.S1_at11/113+32350142..32354070retrotransposon protein, putative, LINE subclass
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein
LOC_Os03g56930Os.14921.1.S1_at10/113+32362177..32363525expressed protein
LOC_Os03g56940Os.11958.1.S1_at11/113+32364586..32365731expressed protein
LOC_Os03g56942NANA3+32365942..32366361hypothetical protein
LOC_Os03g56944NANA3+32366973..32367597expressed protein
LOC_Os03g56950Os.5178.1.A1_s_at11/113+32371392..32374781Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21308.1.S1_at--552--3291Chr03:32350671..32350695 (25 bp)
CAAAGACATGTCTGCCAACTAGGCA
LOC_Os03g56910
OsAffx.21308.1.S1_at--376--891Chr03:32350643..32350667 (25 bp)
AGGCCTGAGGATCCTGAACCTAGAA
LOC_Os03g56910
OsAffx.21308.1.S1_at--763--2452Chr04:26050521..26050545 (25 bp)
AAAATTCATGAGAGCCCTGCGTCTA
LOC_Os04g44370
OsAffx.21308.1.S1_at--264--9152Chr07:25891412..25891436 (25 bp)
TGCGTCTACGCTGGCTGTGGCATGA
LOC_Os07g43200
OsAffx.21308.1.S1_at--435--9371Chr03:32350545..32350569 (25 bp)
TCGAGATCCCCTGCGATGAAGTAGA
LOC_Os03g56910
OsAffx.21308.1.S1_at--853--10774Chr07:29088116..29088140 (25 bp)
TTGTTTGCCGCATCCACTAAGATAA
NONE
OsAffx.21308.1.S1_at--364--291Chr03:32350471..32350495 (25 bp)
ATAGTGCGATTCTGGGACTCTGCGT
LOC_Os03g56910
OsAffx.21308.1.S1_at--720--9613Chr07:29088210..29088234 (25 bp)
TCATGCCCCTAGTATACGCAATTTC
NONE
OsAffx.21308.1.S1_at--409--8471Chr03:32350284..32350308 (25 bp)
TGGCCCTATGGACTGCAGTTCGCAA
LOC_Os03g56910
OsAffx.21308.1.S1_at--41--5374Chr07:29088387..29088411 (25 bp)
GAAGAGTCAGACCAAATCGCCTGGA
LOC_Os07g48590
OsAffx.21308.1.S1_at--897--6994Chr07:29088432..29088455 (24 bp)
GTACTCGGCTTCATCGGCCTACAAA
LOC_Os07g48590
Target Sequence 
CAAAGACATGTCTGCCAACTAGGCAAGGAGGCCTGAGGATCCTGAACCTAGAAAAATTCATGAGAGCCCTGCGTCTACGC
TGGCTGTGGCATGAATGGAAGGACCCAAACAAGCCATGGGTTGGTCTCGAGATCCCCTGCGATGAAGTAGACAAGAGCTT
GTTTGCCGCATCCACTAAGATAACCATTGGTGACGAGAATATAGTGCGATTCTGGGACTCTGCGTGGATTGATGGGAGAA
GACCAAAGGACCTCATGCCCCTAGTATACGCAATTTCTAAGAAGAGGAAAAAGACCCTGCGCCAAGGAAAGGAGAATGAT
GCCTGGGTAGGTGATTTGGCACTGGAAACAAACCCAGTAATTACAGTGGCCCTTGTGGAGCAGCTGGTGGCCCTATGGAC
TGCAGTTCGCAACATGCAGTTAGAAGAAGAAGAGTCAGACCAAATCGCCTGGAAGTTCACTCCTCATGGGCAGTACTCGG
CTTCATCGGCCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis