Browse Element(s) Details


OsAffx.21318.2.S1_at

Description tigr:9629.m03777
TID=OsAffx.21318.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3964011/11hypothetical protein
LOC_Os04g098601/11Actin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39600Os.45953.1.S1_at5/111+22665028..22668325Leucine Rich Repeat family protein, expressed
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21318.2.S1_at--542--4131Chr01:22688051..22688116 (25 bp)
GACGAAGGACCGTGAATTTCAACCT
LOC_Os01g39640
OsAffx.21318.2.S1_at--1126--10211Chr01:22688378..22688402 (25 bp)
TATTGCATGCTCCAGGTTTCTCCCC
LOC_Os01g39640
OsAffx.21318.2.S1_at--818--7651Chr01:22688417..22688441 (25 bp)
GGGATCACCTTGAAGGAAGACGAAA
LOC_Os01g39640
OsAffx.21318.2.S1_at--590--5351Chr01:22688432..22688763 (25 bp)
GAAGACGAAAAGCAGCATGGAACAA
LOC_Os01g39640
OsAffx.21318.2.S1_at--294--831Chr01:22688911..22688933 (23 bp)
ATGGAACAAGTTCTTCGGCGGCAGA
LOC_Os01g39640
OsAffx.21318.2.S1_at--212--8171Chr01:22688911..22688935 (25 bp)
GGAACAAGTTCTTCGGCGGCAGACG
LOC_Os01g39640
OsAffx.21318.2.S1_at--772--1291Chr01:22689053..22689077 (25 bp)
AGATGACGGAAATCATGGAGTGGCA
LOC_Os01g39640
OsAffx.21318.2.S1_at--1069--8012Chr01:22689069..22689093 (25 bp)
GGAGTGGCACAATTCTAATTTAGAA
LOC_Os01g39640
OsAffx.21318.2.S1_at--435--5352Chr01:22689091..22689115 (25 bp)
GAAGATTGCAGTGGCATCTACCCAG
LOC_Os01g39640
OsAffx.21318.2.S1_at--1024--51Chr01:22689095..22689119 (25 bp)
ATTGCAGTGGCATCTACCCAGTTTC
LOC_Os01g39640
OsAffx.21318.2.S1_at--87--3471Chr01:22689099..22689123 (25 bp)
CAGTGGCATCTACCCAGTTTCACTA
LOC_Os01g39640
Target Sequence 
GACGAAGGACCGTGAATTTCAACCTCCGACCGGAGCGTTCGGATTCTTGGCCGGTTCCTGCATCCATGCCAAAATAGGAT
CAGTGTTGGATGCAGAAATGGGGCTCTACATCGACAACCCTTATACCGCCAAGTACTCCGACAACGCGGGCCGGCTCCGC
TTTCGCTGTCTTCCCATCTCCATCAACTCCAAGCCGAGCATGGAGATCACTGGTCTCCTGGAGTCAAGACTCATCCTCCT
TCGCAACGTCGTGTGCCGTCTCAGCACTCACGACTGTTGTGAGGAGTATTGCATGCTCCAGGTTTCTCCCCTTGCTCGAG
ACTGGGGGATCACCTTGAAGGAAGACGAAAAGCAGCATGGAACAAGTTCTTCGGCGGCAGACGGTGGAGGATTAAGGAGA
GGGAGGCACGATGGATGGGGACGAAGGAGGTCATCGGCGAGGGAGGAGCCTGGGGCTGACCAACAGGGAGGCAACAGTGG
AGAGACGGGGATGGGGACAGAGATGACGGAAATCATGGAGTGGCACAATTCTAATTTAGAAGATTGCAGTGGCATCTACC
CAGTTTCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21318.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis