Browse Element(s) Details


OsAffx.2138.1.S1_at

Description tigr:9629.m03118
TID=OsAffx.2138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3329011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33260OsAffx.29789.3.S1_x_at9/111+18646802..18664363ABC-2 type transporter family protein
LOC_Os01g33260OsAffx.29789.1.S1_x_at3/111+18646802..18664363ABC-2 type transporter family protein
LOC_Os01g33260OsAffx.31885.2.S1_x_at1/111+18646802..18664363ABC-2 type transporter family protein
LOC_Os01g33270OsAffx.11297.1.S1_at11/111+18665802..18666290hypothetical protein
LOC_Os01g33290OsAffx.2138.1.S1_at11/111+18676688..18678717hypothetical protein
LOC_Os01g33300Os.8128.1.S1_at11/111+18679680..18681352Exopolygalacturonase precursor, putative, expressed
LOC_Os01g33324OsAffx.8880.1.S1_at1/111+18685874..18690126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33350OsAffx.23485.1.S1_at11/111+18692022..18693256zinc-binding family protein, putative
LOC_Os01g33360OsAffx.23486.1.S1_at11/111+18696856..18698902dnaK protein, expressed
LOC_Os01g33370OsAffx.11299.1.S1_s_at11/111+18701672..18703510expressed protein
LOC_Os01g33370OsAffx.11299.1.S1_at11/111+18701672..18703510expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2138.1.S1_at--780--2631Chr01:18678221..18678245 (25 bp)
AACCAAATTCGCGTTCTTGAATGCA
LOC_Os01g33290
OsAffx.2138.1.S1_at--196--8212Chr03:26742394..26742838 (25 bp)
GGAATCGTTCATCGTACAGCTAAGA
NONE
OsAffx.2138.1.S1_at--173--5451Chr01:18677727..18677751 (25 bp)
GAACCCTAGATATCATGCTATCTGA
LOC_Os01g33290
OsAffx.2138.1.S1_at--316--4872Chr06:16379264..16379288 (25 bp)
GCTATCTGACCTTAATATGCTCTAT
NONE
OsAffx.2138.1.S1_at--827--10134Chr10:8254475..8254499 (25 bp)
TATGCTCTATGGTTTGCCAGGTGAT
NONE
OsAffx.2138.1.S1_at--1048--9812Chr06:16379953..16379972 (20 bp)
TAAAATGCGGCCAGGTCTGCAGGGT
NONE
OsAffx.2138.1.S1_at--847--10833Chr06:16379988..16380008 (21 bp)
TTGTGTTGAGCCTGATGCCGAGAAT
NONE
OsAffx.2138.1.S1_at--428--7851Chr01:18676904..18676928 (25 bp)
GGTAGCATGGAAGCTCCTAGTCCAC
LOC_Os01g33290
OsAffx.2138.1.S1_at--205--5771Chr01:18676851..18676875 (25 bp)
GACGACCGCTTGAAGAGGTAGCCCT
LOC_Os01g33290
OsAffx.2138.1.S1_at--589--2792Chr06:16380085..16380109 (25 bp)
AAGAGGTAGCCCTTGGGCCGCTCAT
NONE
OsAffx.2138.1.S1_at--575--9411Chr01:18676781..18676805 (25 bp)
TCGTCGTGCCTACTGCAGATGCGCG
LOC_Os01g33290
Target Sequence 
AACCAAATTCGCGTTCTTGAATGCAAGAAGAAGGAGTTGCTGGAAGAACAGGAATCGTTCATCGTACAGCTAAGAACCCT
AGATATCATGCTATCTGACCTTAATATGCTCTATGGTTTGCCAGGTGATGGTAAAATGCGGCCAGGTCTGCAGGGTGAGG
TTGGGCTTTGTGTTGAGCCTGATGCCGAGAATGACGACGGTGAGGTAGCATGGAAGCTCCTAGTCCACCCACTTACGGAA
CTCCCCTGCCAGCGGCGACGACCGCTTGAAGAGGTAGCCCTTGGGCCGCTCATCGAGCCAAGGGGTCAACCACCCGACCC
ATGCCCTCGTCGTGCCTACTGCAGATGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis