Browse Element(s) Details


OsAffx.21446.2.A1_at

Description tigr:9629.m04446
TID=OsAffx.21446.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4645011/11hypothetical protein
LOC_Os01g465106/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein
LOC_Os01g46410OsAffx.23687.1.S1_at11/111+26741749..26743030expressed protein
LOC_Os01g46420NANA1+26745147..26746163hypothetical protein
LOC_Os01g46430Os.28901.1.S1_at11/111+26747111..26748829glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g46440NANA1+26750358..26750588expressed protein
LOC_Os01g46450OsAffx.21446.2.A1_at11/111+26755031..26756117hypothetical protein
LOC_Os01g46460NANA1+26756901..26757432hypothetical protein
LOC_Os01g46470OsAffx.21445.3.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.1.S1_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46470OsAffx.21445.2.S1_x_at11/111+26758359..26761175hypothetical protein
LOC_Os01g46490NANA1+26773673..26773873hypothetical protein
LOC_Os01g46500Os.26703.1.S1_at11/111+26776027..26779710F-box domain containing protein, expressed
LOC_Os01g46510Os.27843.1.S2_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510Os.27843.1.S1_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510Os.27843.2.S1_at11/111+26780631..26792799WD-40 repeat family protein, putative, expressed
LOC_Os01g46510OsAffx.21446.2.A1_at6/111+26780631..26792799WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21446.2.A1_at--99--3931Chr01:26755288..26755786 (25 bp)
CGGCCGTATATACTTCCTGAACTAG
LOC_Os01g46450
OsAffx.21446.2.A1_at--568--9892Chr01:26784943..26784967 (25 bp)
TACTTCCTGAACTAGATTGCTCTTT
LOC_Os01g46510
OsAffx.21446.2.A1_at--1059--5472Chr01:26784935..26784959 (25 bp)
GAACTAGATTGCTCTTTGTCCAGCA
LOC_Os01g46510
OsAffx.21446.2.A1_at--181--4772Chr01:26784925..26784949 (25 bp)
GCTCTTTGTCCAGCAAACAATACTA
LOC_Os01g46510
OsAffx.21446.2.A1_at--616--3071Chr01:26755242..26755266 (25 bp)
AATACTATAAAGTTTTCGTAGCACT
LOC_Os01g46450
OsAffx.21446.2.A1_at--568--10292Chr01:26755229..26755253 (25 bp)
TTTCGTAGCACTTGGAATGTCCTTC
LOC_Os01g46450
OsAffx.21446.2.A1_at--444--8512Chr01:26784882..26784906 (25 bp)
TGGAATGTCCTTCTGTCTCCTGAGC
LOC_Os01g46510
OsAffx.21446.2.A1_at--1032--9452Chr01:26784871..26784895 (25 bp)
TCTGTCTCCTGAGCCTGTTTATAAT
LOC_Os01g46510
OsAffx.21446.2.A1_at--98--5871Chr01:26755196..26755220 (25 bp)
GAGCCTGTTTATAATATCCCGGTCT
LOC_Os01g46450
OsAffx.21446.2.A1_at--212--3871Chr01:26755192..26755216 (25 bp)
CTGTTTATAATATCCCGGTCTGTCT
LOC_Os01g46450
OsAffx.21446.2.A1_at--271--3111Chr01:26755184..26755208 (25 bp)
AATATCCCGGTCTGTCTTTGTTGAT
LOC_Os01g46450
Target Sequence 
CGGCCGTATATACTTCCTGAACTAGATTGCTCTTTGTCCAGCAAACAATACTATAAAGTTTTCGTAGCACTTGGAATGTC
CTTCTGTCTCCTGAGCCTGTTTATAATATCCCGGTCTGTCTTTGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21446.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis