Browse Element(s) Details


OsAffx.21476.1.S1_at

Description gb:NM_192223.1
DB_XREF= gi:34911529
GEN=P0421H07.14
TID=OsAffx.21476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0421H07.14 (P0421H07.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g507301/11Poly polymerase central domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50700Os.3419.1.S1_a_at11/111+29446608..29451477Dehydrin family protein, expressed
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21476.1.S1_at--468--5171Chr01:29473146..29473168 (23 bp)
GAAGTCCAGTTCTCCCAAAACATAA
LOC_Os01g50730
OsAffx.21476.1.S1_at--712--1411Chr01:29472126..29472496 (25 bp)
AGAAAAGCAGAGCACCATGCCCTAT
NONE
OsAffx.21476.1.S1_at--1017--1631Chr01:29472061..29472085 (25 bp)
AGCGCAAATGGATGGCGAGCGAAAC
NONE
OsAffx.21476.1.S1_at--408--971Chr01:29472032..29472056 (25 bp)
AGGAGAACGTCATGGTTGGCAGCAC
NONE
OsAffx.21476.1.S1_at--34--7131Chr01:29472024..29472048 (25 bp)
GTCATGGTTGGCAGCACCAGCCGAC
NONE
OsAffx.21476.1.S1_at--383--5391Chr01:29471993..29472017 (25 bp)
GAAGCAACAGGCTCCACGACGCGCA
NONE
OsAffx.21476.1.S1_at--283--1871Chr01:29471978..29472002 (25 bp)
ACGACGCGCAAAAGCTCACCAGTCT
NONE
OsAffx.21476.1.S1_at--799--2351Chr01:29471968..29471992 (25 bp)
AAAGCTCACCAGTCTTCTGTCGAAA
NONE
OsAffx.21476.1.S1_at--697--8711Chr01:29471951..29471975 (25 bp)
TGTCGAAACAGGGACTCGTCATCCT
NONE
OsAffx.21476.1.S1_at--458--9511Chr01:29471921..29471945 (25 bp)
TCTCGTCGTCTTGGACGGGAAGAAG
NONE
OsAffx.21476.1.S1_at--375--1471Chr01:29471898..29471922 (25 bp)
AGAAGGACAACAGTCAACGGATGAC
NONE
Target Sequence 
GAAGTCCAGTTCTCCCAAAACATAAAAACTGTGCAGCCAGGGAAGCTAGCCCTGAAAGAGAGATGGTATGGCCGAGCCGC
AAATCTCTTCTCCTTGAAATGGCAAGCTAAAGATGATCTCATCGATGTTGATCGCTCAAGGAGGCAAGGAAAATTAAGGA
GGCGAGAAAAGCAGAGCACCATGCCCTATCTTCTCCACGAGCGCGCACGAGTAGGAGGGGCTAGTGGGCAGCGCAAATGG
ATGGCGAGCGAAACAAGAAGGAGAACGTCATGGTTGGCAGCACCAGCCGACCTCACCGAAGCAACAGGCTCCACGACGCG
CAAAAGCTCACCAGTCTTCTGTCGAAACAGGGACTCGTCATCCTCCGCATCTCGTCGTCTTGGACGGGAAGAAGAAGGAC
AACAGTCAACGGATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis