Browse Element(s) Details


OsAffx.21476.2.S1_s_at

Description tigr:9629.m04911
TID=OsAffx.21476.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Poly(A) polymerase central domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5073011/11Poly polymerase central domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50700Os.3419.1.S1_a_at11/111+29446608..29451477Dehydrin family protein, expressed
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21476.2.S1_s_at--1084--1951Chr01:29472761..29472785 (25 bp)
ACTGTGCAGCCAGGGAAGCTAGCCC
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--1078--5071Chr01:29472756..29472780 (25 bp)
GCAGCCAGGGAAGCTAGCCCTGAAA
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--207--8191Chr01:29472748..29472772 (25 bp)
GGAAGCTAGCCCTGAAAGAGAGATG
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--133--6251Chr01:29472727..29472751 (25 bp)
GATGGTATGGCCGAGCCGCAAATCT
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--156--8591Chr01:29472725..29472749 (25 bp)
TGGTATGGCCGAGCCGCAAATCTCT
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--865--4511Chr01:29472713..29472737 (25 bp)
GCCGCAAATCTCTTCTCCTTGAAAT
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--441--5131Chr01:29472710..29472734 (25 bp)
GCAAATCTCTTCTCCTTGAAATGGC
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--367--2271Chr01:29472708..29472732 (25 bp)
AAATCTCTTCTCCTTGAAATGGCAA
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--830--9511Chr01:29472705..29472729 (25 bp)
TCTCTTCTCCTTGAAATGGCAAGCT
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--269--851Chr01:29472690..29472714 (25 bp)
ATGGCAAGCTAAAGATGATCTCATC
LOC_Os01g50730
OsAffx.21476.2.S1_s_at--967--451Chr01:29472673..29472697 (25 bp)
ATCTCATCGATGTTGATCGCTCAAG
LOC_Os01g50730
Target Sequence 
ACTGTGCAGCCAGGGAAGCTAGCCCTGAAAGAGAGATGGTATGGCCGAGCCGCAAATCTCTTCTCCTTGAAATGGCAAGC
TAAAGATGATCTCATCGATGTTGATCGCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21476.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis