Browse Element(s) Details


OsAffx.2155.1.S1_x_at

Description gb:NM_193237.1
DB_XREF= gi:34913557
GEN=OSJNBa0086A10.8
TID=OsAffx.2155.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0086A10.8 (OSJNBa0086A10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3512011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35059NANA1+19741055..19741451NA
LOC_Os01g35070NANA1+19742726..19748177retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35080Os.46995.1.S1_x_at1/111+19751547..19753930retrotransposon protein, putative, unclassified
LOC_Os01g35080Os.46995.1.S1_at1/111+19751547..19753930retrotransposon protein, putative, unclassified
LOC_Os01g35090NANA1+19754087..19759617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35100OsAffx.23517.1.S1_x_at11/111+19761141..19761926Zinc finger, C3HC4 type family protein
LOC_Os01g35100OsAffx.23517.1.S1_at11/111+19761141..19761926Zinc finger, C3HC4 type family protein
LOC_Os01g35110NANA1+19763790..19764284hypothetical protein
LOC_Os01g35120OsAffx.2155.1.S1_x_at11/111+19764748..19765539Zinc finger, C3HC4 type family protein
LOC_Os01g35129NANA1+19769162..19769374hypothetical protein
LOC_Os01g35140OsAffx.447.1.S1_at3/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.2.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.52609.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35149NANA1+19777544..19777756hypothetical protein
LOC_Os01g35160Os.47962.1.S1_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.47962.1.S1_x_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_x_at8/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_at5/111+19780987..19785158receptor-like protein kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2155.1.S1_x_at--385--5911Chr01:19765035..19765059 (25 bp)
GAGCTCGTGTTCAGCGAGCCCAAGG
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--117--9431Chr01:19765031..19765055 (25 bp)
TCGTGTTCAGCGAGCCCAAGGCGCT
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--563--4671Chr01:19764962..19764986 (25 bp)
GCGGGATCTGCCTGGACGACCTCGA
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--269--1951Chr01:19764932..19764956 (25 bp)
ACGGCCTGACGACGCCGGTGAGGCT
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--1095--4391Chr01:19764899..19764923 (25 bp)
GCCACGCGTTCCACGGGCAGTGCAT
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--853--4031Chr01:19764893..19764917 (25 bp)
CGTTCCACGGGCAGTGCATCGCCGG
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--106--7331Chr01:19764880..19764904 (25 bp)
GTGCATCGCCGGGTGGCTGCTGGAG
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--842--5751Chr01:19764850..19764874 (25 bp)
GACGTGCCCGATGTGCCGACGAGAC
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--22--6271Chr01:19764841..19764865 (25 bp)
GATGTGCCGACGAGACTTCTCCCGC
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--166--4571Chr01:19764807..19764831 (25 bp)
GCGCCGTCATGCTACCAGCAATATG
LOC_Os01g35120
OsAffx.2155.1.S1_x_at--934--4151Chr01:19764806..19764830 (25 bp)
CGCCGTCATGCTACCAGCAATATGG
LOC_Os01g35120
Target Sequence 
GAGCTCGTGTTCAGCGAGCCCAAGGCGCTCGTCGCCGACGTCGTGGCGGCCGGCGGCGGCGCCGGGAAGCCGTGCGGGAT
CTGCCTGGACGACCTCGACGCCGACGGCCTGACGACGCCGGTGAGGCTGCCGTGCGGCCACGCGTTCCACGGGCAGTGCA
TCGCCGGGTGGCTGCTGGAGGGGAGGACGTGCCCGATGTGCCGACGAGACTTCTCCCGCCTCGTCCTCGCGCCGTCATGC
TACCAGCAATATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2155.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis