Browse Element(s) Details


Os.35785.1.S1_at

Description gb:CA764236
DB_XREF= gi:27546043
DB_XREF=AF53-Rpf_02_L21_T7_093.ab1
CLONE=C0000669
TID=Os.35785.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine protein kinase (OSJNBa0086A10.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g351605/11receptor-like protein kinase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35090NANA1+19754087..19759617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35100OsAffx.23517.1.S1_x_at11/111+19761141..19761926Zinc finger, C3HC4 type family protein
LOC_Os01g35100OsAffx.23517.1.S1_at11/111+19761141..19761926Zinc finger, C3HC4 type family protein
LOC_Os01g35110NANA1+19763790..19764284hypothetical protein
LOC_Os01g35120OsAffx.2155.1.S1_x_at11/111+19764748..19765539Zinc finger, C3HC4 type family protein
LOC_Os01g35129NANA1+19769162..19769374hypothetical protein
LOC_Os01g35140OsAffx.447.1.S1_at3/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.2.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.52609.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35149NANA1+19777544..19777756hypothetical protein
LOC_Os01g35160Os.47962.1.S1_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.47962.1.S1_x_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_x_at8/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_at5/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35170Os.27235.1.S1_at11/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35170Os.27235.2.S1_x_at10/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35184Os.41019.1.S1_at11/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35184OsAffx.8934.1.S1_x_at1/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35200OsAffx.32056.1.S1_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.32056.1.S1_x_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.30536.1.S1_x_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.8676.1.S1_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35785.1.S1_at--960--10851Chr01:19781224..19781248 (25 bp)
TTGGAACAGTACTAACTAAGGTCTC
LOC_Os01g35160
Os.35785.1.S1_at--260--8511Chr01:19781223..19781247 (25 bp)
TGGAACAGTACTAACTAAGGTCTCC
LOC_Os01g35160
Os.35785.1.S1_at--865--8151Chr01:19781222..19781246 (25 bp)
GGAACAGTACTAACTAAGGTCTCCT
LOC_Os01g35160
Os.35785.1.S1_at--938--5471Chr01:19781221..19781245 (25 bp)
GAACAGTACTAACTAAGGTCTCCTG
LOC_Os01g35160
Os.35785.1.S1_at--500--2391Chr01:19781221..19781244 (24 bp)
AACAGTACTAACTAAGGTCTCCTGG
LOC_Os01g35160
Os.35785.1.S1_at--569--2111NONE
ACAGTACTAACTAAGGTCTCCTGGT
NONE
Os.35785.1.S1_at--271--3451NONE
CAGTACTAACTAAGGTCTCCTGGTG
NONE
Os.35785.1.S1_at--262--1171NONE
AGTACTAACTAAGGTCTCCTGGTGC
NONE
Target Sequence 
TTGGAACAGTACTAACTAAGGTCTCCTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis