Browse Element(s) Details

Os.41019.1.S1_at

Description

gb:AK120431.1
DB_XREF= gi:37990054
TID=Os.41019.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine-specific protein kinase (OSJNBa0086A10.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096H24, full insert sequence.
FL= gb:AK120431.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g35184	11/11	CBL-interacting serine/threonine-protein kinase 24, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g35140	OsAffx.447.1.S1_at	3/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	Os.46715.1.S1_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	Os.46715.1.S1_x_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	OsAffx.22947.1.S1_x_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	OsAffx.22947.2.S1_x_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	Os.52609.1.S1_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35149	NA	NA	1	+	19777544..19777756	hypothetical protein
LOC_Os01g35160	Os.47962.1.S1_at	11/11	1	+	19780987..19785158	receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160	Os.47962.1.S1_x_at	11/11	1	+	19780987..19785158	receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160	Os.35785.1.S1_x_at	8/11	1	+	19780987..19785158	receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160	Os.35785.1.S1_at	5/11	1	+	19780987..19785158	receptor-like protein kinase 4, putative, expressed
LOC_Os01g35170	Os.27235.1.S1_at	11/11	1	+	19793154..19795861	tRNA methyltransferase family protein, expressed
LOC_Os01g35170	Os.27235.2.S1_x_at	10/11	1	+	19793154..19795861	tRNA methyltransferase family protein, expressed
LOC_Os01g35184	Os.41019.1.S1_at	11/11	1	+	19796109..19804437	CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35184	OsAffx.8934.1.S1_x_at	1/11	1	+	19796109..19804437	CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35200	OsAffx.32056.1.S1_at	11/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.32056.1.S1_x_at	11/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.30536.1.S1_x_at	1/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.8676.1.S1_at	1/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210	OsAffx.10637.3.S1_s_at	11/11	1	+	19816033..19819719	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210	OsAffx.10637.1.S1_s_at	11/11	1	+	19816033..19819719	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210	OsAffx.10637.4.S1_s_at	8/11	1	+	19816033..19819719	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35220	Os.35344.3.S1_x_at	10/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.3.S1_x_at	9/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.2.S1_s_at	8/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	Os.35344.18.S1_x_at	8/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.5.S1_x_at	6/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.5.S1_at	5/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.1.S1_s_at	4/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.22940.2.S1_at	4/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class
LOC_Os01g35220	OsAffx.31552.2.S1_at	1/11	1	+	19821591..19828758	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0009628	biological_process	response to abiotic stimulus
GO:0009651	biological_process	response to salt stress
GO:0009735	biological_process	response to cytokinin stimulus
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009738	biological_process	abscisic acid mediated signaling
GO:0009845	biological_process	seed germination
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.41019.1.S1_at--1072--783	1	Chr01:19798226..19798250 (25 bp)	GGTACAAGACACACATTCGCAATTA	LOC_Os01g35184
Os.41019.1.S1_at--566--561	1	Chr01:19797303..19797327 (25 bp)	GACAAGTCATCTCGCAGTTATGCTT	LOC_Os01g35184
Os.41019.1.S1_at--278--555	1	Chr01:19797179..19797200 (22 bp)	GAAATTTTTGAAGTTGCCCCATCGA	LOC_Os01g35184
Os.41019.1.S1_at--821--917	1	Chr01:19797165..19797189 (25 bp)	TGCCCCATCGATCTTCATGATTGAA	LOC_Os01g35184
Os.41019.1.S1_at--904--277	1	Chr01:19797135..19797159 (25 bp)	AAGAGCAGCGGGAGACACCTCCGAT	LOC_Os01g35184
Os.41019.1.S1_at--344--795	1	Chr01:19796520..19796544 (25 bp)	GGATATCGCGGCTATCGAAGCGCTA	LOC_Os01g35184
Os.41019.1.S1_at--831--717	1	Chr01:19796495..19796519 (25 bp)	GTCTGCTTTGACATCCATCATTTGT	LOC_Os01g35184
Os.41019.1.S1_at--1083--599	1	Chr01:19796258..19796282 (25 bp)	GATGACCATGTACAAAGGGCCACTG	LOC_Os01g35184
Os.41019.1.S1_at--444--283	1	Chr01:19796232..19796256 (25 bp)	AAGTTTTGGCATCTCAGTTTCTCTG	LOC_Os01g35184
Os.41019.1.S1_at--174--1049	1	Chr01:19796184..19796208 (25 bp)	TTAAACAGTTTGACTGACCGCCGCT	LOC_Os01g35184
Os.41019.1.S1_at--1006--247	1	Chr01:19796148..19796172 (25 bp)	AACACGCTTTGTAGTTTGTCTCAAG	LOC_Os01g35184

Target Sequence

GGTACAAGACACACATTCGCAATTATAAGANNNNNNNNNANGNNNNNNNNNNNAATAAGACAAGTCATCTCGCAGTTATG
CTTGAAATTTTTGAAGTTGCCCCATCGATCTTCATGATTGAACTGCAAAGAGCAGCGGGAGACACCTCCGATTATAACAA
GTTTATAAATAATTACTGCAGCAAATTAGACGATATCATTTGGAATTTTCCAATTGAGAAGAGCAAATCAAGGATATCGC
GGCTATCGAAGCGCTAGTCTGCTTTGACATCCATCATTTGTACTATGTGTAATCTAATGCTATGCAGCTTGAGTGGTATT
GGGTTTGTTAGTGGATGTATTTGTAGAGATTGCCAATTCAATTCATCTCTGATCTTTTAGTTATAAGAGATGACCATGTA
CAAAGGGCCACTGAAAGTTTTGGCATCTCAGTTTCTCTGTACAATGTTTGCAGCGAGGTATATTAAACAGTTTGACTGAC
CGCCGCTCCCTGCTCATCAACACGCTTTGTAGTTTGTCTCAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis