Browse Element(s) Details


Os.47962.1.S1_at

Description gb:AK065803.1
DB_XREF= gi:32975821
TID=Os.47962.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036D01, full insert sequence.
FL= gb:AK065803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3516011/11receptor-like protein kinase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35090NANA1+19754087..19759617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35100OsAffx.23517.1.S1_x_at11/111+19761141..19761926Zinc finger, C3HC4 type family protein
LOC_Os01g35100OsAffx.23517.1.S1_at11/111+19761141..19761926Zinc finger, C3HC4 type family protein
LOC_Os01g35110NANA1+19763790..19764284hypothetical protein
LOC_Os01g35120OsAffx.2155.1.S1_x_at11/111+19764748..19765539Zinc finger, C3HC4 type family protein
LOC_Os01g35129NANA1+19769162..19769374hypothetical protein
LOC_Os01g35140OsAffx.447.1.S1_at3/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.2.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.52609.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35149NANA1+19777544..19777756hypothetical protein
LOC_Os01g35160Os.47962.1.S1_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.47962.1.S1_x_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_x_at8/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_at5/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35170Os.27235.1.S1_at11/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35170Os.27235.2.S1_x_at10/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35184Os.41019.1.S1_at11/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35184OsAffx.8934.1.S1_x_at1/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35200OsAffx.32056.1.S1_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.32056.1.S1_x_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.30536.1.S1_x_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.8676.1.S1_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47962.1.S1_at--987--8691Chr01:19781119..19781143 (25 bp)
TGTTTCCTCTAGAAAACAATGGAAG
LOC_Os01g35160
Os.47962.1.S1_at--124--3191Chr01:19781076..19781100 (25 bp)
CAATCAAGGATCTTTGTTTTGCTCT
LOC_Os01g35160
Os.47962.1.S1_at--640--2911Chr01:19781071..19781095 (25 bp)
AAGGATCTTTGTTTTGCTCTTGTTG
LOC_Os01g35160
Os.47962.1.S1_at--413--9551Chr01:19781066..19781090 (25 bp)
TCTTTGTTTTGCTCTTGTTGGGATC
LOC_Os01g35160
Os.47962.1.S1_at--93--8771Chr01:19781062..19781086 (25 bp)
TGTTTTGCTCTTGTTGGGATCGTTT
LOC_Os01g35160
Os.47962.1.S1_at--397--3751Chr01:19781055..19781079 (25 bp)
CTCTTGTTGGGATCGTTTGGGCATT
LOC_Os01g35160
Os.47962.1.S1_at--48--3631Chr01:19781053..19781077 (25 bp)
CTTGTTGGGATCGTTTGGGCATTTC
LOC_Os01g35160
Os.47962.1.S1_at--836--6611Chr01:19781050..19781074 (25 bp)
GTTGGGATCGTTTGGGCATTTCAAG
LOC_Os01g35160
Os.47962.1.S1_at--903--6391Chr01:19781045..19781069 (25 bp)
GATCGTTTGGGCATTTCAAGGACAT
LOC_Os01g35160
Os.47962.1.S1_at--338--3571Chr01:19781034..19781058 (25 bp)
CATTTCAAGGACATTTTTAGTGGTT
LOC_Os01g35160
Os.47962.1.S1_at--503--9551Chr01:19781018..19781042 (25 bp)
TTAGTGGTTGATCGAAGAAAAATTC
LOC_Os01g35160
Target Sequence 
TGTTTCCTCTAGAAAACAATGGAAGTTTTTATTGTTTGGTTTGCAATCAAGGATCTTTGTTTTGCTCTTGTTGGGATCGT
TTGGGCATTTCAAGGACATTTTTAGTGGTTGATCGAAGAAAAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis