Browse Element(s) Details


Os.27235.1.S1_at

Description gb:AK061630.1
DB_XREF= gi:32971648
TID=Os.27235.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086A10.11 (OSJNBa0086A10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A01, full insert sequence.
FL= gb:AK061630.1 gb:AK099631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3517011/11tRNA methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35129NANA1+19769162..19769374hypothetical protein
LOC_Os01g35140OsAffx.447.1.S1_at3/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.2.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.52609.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35149NANA1+19777544..19777756hypothetical protein
LOC_Os01g35160Os.47962.1.S1_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.47962.1.S1_x_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_x_at8/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_at5/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35170Os.27235.1.S1_at11/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35170Os.27235.2.S1_x_at10/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35184Os.41019.1.S1_at11/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35184OsAffx.8934.1.S1_x_at1/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35200OsAffx.32056.1.S1_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.32056.1.S1_x_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.30536.1.S1_x_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.8676.1.S1_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.3.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.1.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.4.S1_s_at8/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27235.1.S1_at--533--5551Chr01:19795271..19795295 (25 bp)
GAAACCTGCCAATGGTTCGCATCTC
LOC_Os01g35170
Os.27235.1.S1_at--412--6711Chr01:19795285..19795309 (25 bp)
GTTCGCATCTCTCCAATGTTTTGGC
LOC_Os01g35170
Os.27235.1.S1_at--1007--8771Chr01:19795301..19795325 (25 bp)
TGTTTTGGCCCATCTTTTTTCTGTC
LOC_Os01g35170
Os.27235.1.S1_at--242--10371Chr01:19795316..19795340 (25 bp)
TTTTTCTGTCGGATCATTCCTACGA
LOC_Os01g35170
Os.27235.1.S1_at--1036--1251Chr01:19795342..19795366 (25 bp)
AGATATCTGCGGTGGTAACCATATG
LOC_Os01g35170
Os.27235.1.S1_at--746--8131Chr01:19795488..19795512 (25 bp)
GGAAATTTTACAAACTTGCCGCAGC
LOC_Os01g35170
Os.27235.1.S1_at--175--10711Chr01:19795503..19795527 (25 bp)
TTGCCGCAGCAAACTGACCATTTTT
LOC_Os01g35170
Os.27235.1.S1_at--319--5851Chr01:19795518..19795542 (25 bp)
GACCATTTTTGAGACGCAGCTGCTA
LOC_Os01g35170
Os.27235.1.S1_at--501--1431Chr01:19795563..19795587 (25 bp)
AGAACTTGGCTCTCACTGGTGAAGT
LOC_Os01g35170
Os.27235.1.S1_at--371--551Chr01:19795649..19795673 (25 bp)
ATCCCTGAACTTTGTATGGCCTGTA
LOC_Os01g35170
Os.27235.1.S1_at--1145--7671Chr01:19795801..19795825 (25 bp)
GGGTTTCATTCTACAATTCGTTTCA
LOC_Os01g35170
Target Sequence 
GAAACCTGCCAATGGTTCGCATCTCTCCAATGTTTTGGCCCATCTTTTTTCTGTCGGATCATTCCTACGACAGATATCTG
CGGTGGTAACCATATGTAAGTTCAGCGTCTGNTAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGTTGGGGTTGTT
CTCTAGGAATCGAAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAACTTGCCGCA
GCAAACTGACCATTTTTGAGACGCAGCTGCTAAAGAATGGTGTTTACAATAGAGAACTTGGCTCTCACTGGTGAAGTGGT
GATAATAGGAGAGAAGGATGATCATGTTTTTTTCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCT
GTAAATTGTAACCTTATGAATGTGTGGCAGCAGTGGACATTTTGCTAGCAACAGAATCATGCAATNTGAAGTAGNNGNCA
AACTTTTTTTTAGAGGAGCTTACAATCTTTGAGAATTGATATCACTGTATGGGTTTCATTCTACAATTCGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis