Browse Element(s) Details

Os.35785.1.S1_x_at

Description

gb:CA764236
DB_XREF= gi:27546043
DB_XREF=AF53-Rpf_02_L21_T7_093.ab1
CLONE=C0000669
TID=Os.35785.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine protein kinase (OSJNBa0086A10.10), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g35160	8/11	receptor-like protein kinase 4, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g35090	NA	NA	1	+	19754087..19759617	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35100	OsAffx.23517.1.S1_x_at	11/11	1	+	19761141..19761926	Zinc finger, C3HC4 type family protein
LOC_Os01g35100	OsAffx.23517.1.S1_at	11/11	1	+	19761141..19761926	Zinc finger, C3HC4 type family protein
LOC_Os01g35110	NA	NA	1	+	19763790..19764284	hypothetical protein
LOC_Os01g35120	OsAffx.2155.1.S1_x_at	11/11	1	+	19764748..19765539	Zinc finger, C3HC4 type family protein
LOC_Os01g35129	NA	NA	1	+	19769162..19769374	hypothetical protein
LOC_Os01g35140	OsAffx.447.1.S1_at	3/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	Os.46715.1.S1_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	Os.46715.1.S1_x_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	OsAffx.22947.1.S1_x_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	OsAffx.22947.2.S1_x_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140	Os.52609.1.S1_at	1/11	1	+	19770126..19774676	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35149	NA	NA	1	+	19777544..19777756	hypothetical protein
LOC_Os01g35160	Os.47962.1.S1_at	11/11	1	+	19780987..19785158	receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160	Os.47962.1.S1_x_at	11/11	1	+	19780987..19785158	receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160	Os.35785.1.S1_x_at	8/11	1	+	19780987..19785158	receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160	Os.35785.1.S1_at	5/11	1	+	19780987..19785158	receptor-like protein kinase 4, putative, expressed
LOC_Os01g35170	Os.27235.1.S1_at	11/11	1	+	19793154..19795861	tRNA methyltransferase family protein, expressed
LOC_Os01g35170	Os.27235.2.S1_x_at	10/11	1	+	19793154..19795861	tRNA methyltransferase family protein, expressed
LOC_Os01g35184	Os.41019.1.S1_at	11/11	1	+	19796109..19804437	CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35184	OsAffx.8934.1.S1_x_at	1/11	1	+	19796109..19804437	CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35200	OsAffx.32056.1.S1_at	11/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.32056.1.S1_x_at	11/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.30536.1.S1_x_at	1/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200	OsAffx.8676.1.S1_at	1/11	1	+	19807511..19814522	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.35785.1.S1_x_at--716--725	1	Chr01:19781644..19781668 (25 bp)	GTCCTGTTAACCGATTGCCTAGTAG	LOC_Os01g35160
Os.35785.1.S1_x_at--781--805	1	Chr01:19781570..19781594 (25 bp)	GGAGAATGCGGCTGATCGACCTACC	LOC_Os01g35160
Os.35785.1.S1_x_at--706--509	1	Chr01:19781489..19781513 (25 bp)	GCACCCAGCATACTTCAACGTAAGG	LOC_Os01g35160
Os.35785.1.S1_x_at--344--91	1	Chr01:19781451..19781475 (25 bp)	AGGCGTCGTCAGCTATTGATCTTGA	LOC_Os01g35160
Os.35785.1.S1_x_at--994--13	1	Chr01:19781401..19781425 (25 bp)	ATTACAGCCCCAGGTTGTCGATAGC	LOC_Os01g35160
Os.35785.1.S1_x_at--464--1023	1	Chr01:19781319..19781343 (25 bp)	TTTGGCATTATCCATGTCAGGTGAC	LOC_Os01g35160
Os.35785.1.S1_x_at--1090--711	1	Chr01:19781304..19781328 (25 bp)	GTCAGGTGACCTTATCCTCTGGATA	LOC_Os01g35160
Os.35785.1.S1_x_at--186--213	1	Chr01:19781269..19781293 (25 bp)	ACAGAGGACCAGTGCATTCGGCATT	LOC_Os01g35160
Os.35785.1.S1_x_at--918--561	1	NONE	GACAAGCCAGCTTTCATTGGAACAG	NONE
Os.35785.1.S1_x_at--263--117	1	NONE	AGTACTAACTAAGGTCTCCTGGTGC	NONE
Os.35785.1.S1_x_at--465--537	1	NONE	GAAGAATATTTCCTGGCCCGAAGCT	NONE

Target Sequence

GTCCTGTTAACCGATTGCCTAGTAGAAGCACCACTGATGATGAAATGCGTCAACATCGCATTGCTATGTGTACAGGAGAA
TGCGGCTGATCGACCTACCATGTCAGATGTCGTGGCAATGCTAAGCAGTGAAGGGGTGAGTCTGCCTGTGCCCAAGCACC
CAGCATACTTCAACGTAAGGGTCAGAAACGGAGAGGCGTCGTCAGCTATTGATCTTGAGCTGTGCAGTGTGAATGAAGTG
ACCATTACAGCCCCAGGTTGTCGATAGCCAGTTCACAATCTAAATAACATGTAAGTTGCTGTTGATGAGATTAATCATGC
CTACATTTGGCATTATCCATGTCAGGTGACCTTATCCTCTGGATACTCAAGTAACACAGAGGACCAGTGCATTCGGCATT
GGATGACAAGCCAGCTTTCATTGGAACAGTACTAACTAAGGTCTCCTGGTGCAAGCAGTTTTTGAGATGATAGAAGAATA
TTTCCTGGCCCGAAGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis